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Narayan Ganesan
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2010 – 2019
- 2018
- [j5]Hanyu Jiang
, Narayan Ganesan, Yu-Dong Yao
CUDAMPF++: A Proactive Resource Exhaustion Scheme for Accelerating Homologous Sequence Search on CUDA-Enabled GPU. IEEE Trans. Parallel Distributed Syst. 29(10): 2206-2222 (2018) - 2017
- [i1]Hanyu Jiang, Narayan Ganesan, Yu-Dong Yao:
CUDAMPF++: A Proactive Resource Exhaustion Scheme for Accelerating Homologous Sequence Search on CUDA-enabled GPU. CoRR abs/1707.09683 (2017) - 2016
- [j4]Hanyu Jiang
CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU. BMC Bioinform. 17: 106 (2016) - [j3]Narayan Ganesan, Jie Li, Vishakha Sharma, Hanyu Jiang, Adriana B. Compagnoni:
Process Simulation of Complex Biological Pathways in Physical Reactive Space and Reformulated for Massively Parallel Computing Platforms. IEEE ACM Trans. Comput. Biol. Bioinform. 13(2): 365-379 (2016) - [c11]Hanyu Jiang, Morisa Manzella, Luka Djapic, Narayan Ganesan:
Computational Framework for in-Silico Study of Virtual Cell Biology via Process Simulation and Multiscale Modeling. BCB 2016: 384-393 - 2015
- [c10]Hanyu Jiang, Narayan Ganesan:
Fine-Grained Acceleration of HMMER 3.0 via Architecture-Aware Optimization on Massively Parallel Processors. IPDPS Workshops 2015: 375-383 - 2014
- [c9]Jie Li, Amin Salighehdar, Narayan Ganesan:
Simulation of Complex Biochemical Pathways in 3D Process Space via Heterogeneous Computing Platform: Preliminary Results. ARC 2014: 227-232 - [c8]Jie Li, Amin Salighehdar, Narayan Ganesan:
Process Simulation of Complex Biochemical Pathways in Explicit 3D Space Enabled by Heterogeneous Computing Platform. IPDPS Workshops 2014: 528-535 - 2013
- [j2]Michela Taufer
GPU-Enabled Macromolecular Simulation: Challenges and Opportunities. Comput. Sci. Eng. 15(1): 56-65 (2013) - [c7]Narayan Ganesan, Tzyh Jong Tarn:
Achieving decoherence suppression in open quantum systems by utilizing the model of environmental interactions. ACC 2013: 2562-2567 - 2012
- [c6]Jie Li, Vishakha Sharma, Narayan Ganesan, Adriana B. Compagnoni:
Simulation and study of large-scale bacteria-materials interactions via BioScape enabled by GPUs. BCB 2012: 610-612 - 2011
- [j1]Narayan Ganesan, Brad A. Bauer, Timothy R. Lucas, Sandeep Patel
Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs). J. Comput. Chem. 32(14): 2958-2973 (2011) - [c5]Narayan Ganesan, Michela Taufer
FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME. IPDPS Workshops 2011: 472-480 - 2010
- [c4]Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism. BCB 2010: 418-421
2000 – 2009
- 2009
- [c3]Roger D. Chamberlain, Narayan Ganesan:
Sorting on architecturally diverse computer systems. HPRCTA@SC 2009: 39-46 - 2007
- [c2]Narayan Ganesan, Tzyh Jong Tarn:
Quantum internal model principle and enhanced disturbance decoupling. CDC 2007: 6358-6364 - 2005
- [c1]Narayan Ganesan, Tzyh Jong Tarn:
Control of decoherence in open quantum systems using feedback. CDC/ECC 2005: 427-433
Coauthor Index
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