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Xuefeng Cui
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2020 – today
- 2025
- [j19]Xuan Zhang, Cheng Chen, Xiaoting Wang, Haitao Jiang, Wei Zhao, Xuefeng Cui:
MetaGIN: a lightweight framework for molecular property prediction. Frontiers Comput. Sci. 19(5): 195912 (2025) - 2024
- [j18]Lijuan Miao
, Yangfeng Zou, Xuefeng Cui, Giri Raj Kattel
Predicting China's Maize Yield Using Multi-Source Datasets and Machine Learning Algorithms. Remote. Sens. 16(13): 2417 (2024) - [c28]Han Yang, Haodi Feng, Xuefeng Cui:
DTMIReID: Person Re-identification Based on Deformable Transformer to Incorporate Mutual Information Between Images. ICPR (14) 2024: 455-472 - [c27]Yaoyu Wang, Xiaohua Wan, Cheng Chen, Fa Zhang, Xuefeng Cui:
Central Feature Network Enables Accurate Detection of Both Small and Large Particles in Cryo-Electron Tomography. ISBRA (1) 2024: 212-223 - 2023
- [j17]Cheng Chen
ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 20(6): 3421-3429 (2023) - [c26]Cuiyuan Li, Fa Zhang, Kai Hu, Xuefeng Cui:
Variational Clustering and Denoising of Spatial Transcriptomics. BIBM 2023: 281-286 - [c25]Yongshuai Wang, Xiaojun Cai, Defeng Li, Shiwei Sun, Cheng Chen, Xuefeng Cui:
Learned Fingerprint Embedding for Large-Scale Peptide Mass Spectra Retrieval. BIBM 2023: 306-311 - [c24]Weiguo Li, Junchi Ma, Cuiyuan Li, Ting Yu, Xuefeng Cui:
Using Deep Learning to Classify Full-Length Transcriptome Sequences. BIBM 2023: 333-338 - [c23]Yanmin Liu, Xuan Zhang, Wei Zhao, Daming Zhu, Xuefeng Cui:
De Novo Molecular Structure Generation from Mass Spectra. BIBM 2023: 373-378 - [e1]Xingpeng Jiang, Haiying Wang, Reda Alhajj, Xiaohua Hu, Felix Engel, Mufti Mahmud, Nadia Pisanti, Xuefeng Cui, Hong Song:
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023, Istanbul, Turkiye, December 5-8, 2023. IEEE 2023, ISBN 979-8-3503-3748-8 [contents] - 2022
- [j16]Yu Hao, Xiaohua Wan, Rui Yan, Zhiyong Liu, Jintao Li, Shihua Zhang, Xuefeng Cui
VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms. Comput. Methods Programs Biomed. 221: 106871 (2022) - [c22]Jinsheng Shang, Qihong Jiao, Cheng Chen, Daming Zhu, Xuefeng Cui:
Pretraining Transformers for TCR-pMHC Binding Prediction. BIBM 2022: 26-31 - [c21]Tiantian Li, Daming Zhu, Haitao Jiang, Haodi Feng, Xuefeng Cui:
Longest k-tuple Common Sub-Strings. BIBM 2022: 63-66 - [c20]Jing Gao, Fa Zhang, Kai Hu, Xuefeng Cui:
Hexagonal Convolutional Neural Network for Spatial Transcriptomics Classification. BIBM 2022: 200-205 - [c19]Zhengwei Wang, Yuxiao Wang, Xuan Zhang, Zhaoxu Meng, Zhenghe Yang, Wei Zhao, Xuefeng Cui:
Graph-based Reaction Classification by Contrasting between Precursors and Products. BIBM 2022: 354-359 - [c18]Jingxuan Wang, Zongzhao Qiu, Xuan Zhang, Zhenghe Yang, Wei Zhao, Xuefeng Cui:
Boosting Deep Learning-based Docking with Cross-attention and Centrality Embedding. BIBM 2022: 360-365 - [c17]Xuan Zhang, Cheng Chen, Zhaoxu Meng, Zhenghe Yang, Haitao Jiang, Xuefeng Cui:
CoAtGIN: Marrying Convolution and Attention for Graph-based Molecule Property Prediction. BIBM 2022: 374-379 - [i1]Ilja Gubins, Marten L. Chaillet, Gijs van der Schot, M. Cristina Trueba, Remco C. Veltkamp, Friedrich Förster, Xiao Wang, Daisuke Kihara, Emmanuel Moebel, Nguyen P. Nguyen, Tommi A. White, Filiz Bunyak, Giorgos Papoulias, Stavros Gerolymatos, Evangelia I. Zacharaki, Konstantinos Moustakas, Xiangrui Zeng, Sinuo Liu, Min Xu, Yaoyu Wang, Cheng Chen, Xuefeng Cui, Fa Zhang:
SHREC 2021: Classification in cryo-electron tomograms. CoRR abs/2203.10035 (2022) - 2021
- [j15]Cheng Chen, Han Shi, Zhiwen Jiang, Adil Salhi, Ruixin Chen, Xuefeng Cui, Bin Yu
DNN-DTIs: Improved drug-target interactions prediction using XGBoost feature selection and deep neural network. Comput. Biol. Medicine 136: 104676 (2021) - [j14]Wenyan Gu, Aizhong Zhou
SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data. J. Comput. Biol. 28(8): 774-788 (2021) - [c16]Ilja Gubins, Marten L. Chaillet, Gijs van der Schot, M. Cristina Trueba, Remco C. Veltkamp, Friedrich Förster, Xiao Wang, Daisuke Kihara, Emmanuel Moebel, Nguyen P. Nguyen, Tommi A. White, Filiz Bunyak
SHREC 2021: Classification in Cryo-electron Tomograms. 3DOR 2021: 5-17 - [c15]Cheng Chen, Yuguo Zha
Hydrogen bonds meet self-attention: all you need for protein structure embedding. BIBM 2021: 12-17 - [c14]Cheng Chen, Zongzhao Qiu, Zhenghe Yang, Bin Yu
Jointly Learning to Align and Aggregate with Cross Attention Pooling for Peptide-MHC Class I Binding Prediction. BIBM 2021: 18-23 - [c13]Yuxiao Wang, Zongzhao Qiu, Qihong Jiao, Cheng Chen, Zhaoxu Meng, Xuefeng Cui:
Structure-Based Protein-Drug Affinity Prediction with Spatial Attention Mechanisms. BIBM 2021: 92-97 - [c12]Zongzhao Qiu, Qihong Jiao, Yuxiao Wang, Cheng Chen, Daming Zhu, Xuefeng Cui:
rzMLP-DTA: gMLP network with ReZero for sequence-based drug-target affinity prediction. BIBM 2021: 308-313 - [c11]Qihong Jiao, Zongzhao Qiu, Yuxiao Wang, Cheng Chen, Zhenghe Yang, Xuefeng Cui:
Edge-Gated Graph Neural Network for Predicting Protein-Ligand Binding Affinities. BIBM 2021: 334-339 - 2020
- [j13]Chao Wen
MIMO Radar Imaging With Multiple Probing Pulses for 2D Off-Grid Targets via Variational Sparse Bayesian Learning. IEEE Access 8: 147591-147603 (2020) - [j12]Ilja Gubins, Marten L. Chaillet
SHREC 2020: Classification in cryo-electron tomograms. Comput. Graph. 91: 279-289 (2020) - [c10]Shan Gao, Renmin Han, Xiangrui Zeng, Xuefeng Cui, Zhiyong Liu, Min Xu, Fa Zhang:
Dilated-DenseNet for Macromolecule Classification in Cryo-electron Tomography. ISBRA 2020: 82-94 - [c9]Wenyan Gu, Aizhong Zhou, Lusheng Wang, Shiwei Sun, Xuefeng Cui, Daming Zhu:
SVLR: Genome Structure Variant Detection Using Long Read Sequencing Data. ISBRA 2020: 140-153
2010 – 2019
- 2019
- [j11]Jim Jing-Yan Wang, Xuefeng Cui, Ge Yu, Lili Guo, Xin Gao
When sparse coding meets ranking: a joint framework for learning sparse codes and ranking scores. Neural Comput. Appl. 31(3): 701-710 (2019) - [j10]Guanghui Zheng
Visible and Near-Infrared Reflectance Spectroscopy Analysis of a Coastal Soil Chronosequence. Remote. Sens. 11(20): 2336 (2019) - [c8]Ilja Gubins, Gijs van der Schot, Remco C. Veltkamp, Friedrich Förster
Classification in Cryo-Electron Tomograms. 3DOR@Eurographics 2019: 49-54 - [r1]Xuefeng Cui, Yaosen Min:
Homologous Protein Detection. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 697-705 - 2018
- [c7]Yaosen Min, Shang Liu, Chenyao Lou, Xuefeng Cui:
Learning Protein Structural Fingerprints under the Label-Free Supervision of Domain Knowledge. BIBM 2018: 69-74 - [c6]Zihao Wang, Mingzhe Zhang, Jingrong Zhang, Rui Yan
Mmalloc: A Dynamic Memory Management on Many-core Coprocessor for the Acceleration of Storage-intensive Bioinformatics Application. BIBM 2018: 771-774 - 2017
- [j9]Xuefeng Cui, Xin Gao
K-nearest uphill clustering in the protein structure space. Neurocomputing 220: 52-59 (2017) - [j8]Jim Jing-Yan Wang, Ivor Wai-Hung Tsang
Multi-instance dictionary learning via multivariate performance measure optimization. Pattern Recognit. 66: 448-459 (2017) - 2016
- [j7]Xuefeng Cui, Zhiwu Lu
CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction. Bioinform. 32(12): 332-340 (2016) - [j6]Hiroyuki Kuwahara, Meshari Alazmi
MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind. Nucleic Acids Res. 44(Webserver-Issue): W217-W225 (2016) - 2015
- [j5]Xuefeng Cui, Hammad Naveed
Finding optimal interaction interface alignments between biological complexes. Bioinform. 31(12): 133-141 (2015) - [j4]Lijuan Miao, Peilong Ye, Bin He, Lizi Chen, Xuefeng Cui:
Future Climate Impact on the Desertification in the Dry Land Asia Using AVHRR GIMMS NDVI3g Data. Remote. Sens. 7(4): 3863-3877 (2015) - [c5]Xuefeng Cui, Hiroyuki Kuwahara, Shuai Cheng Li
Compare local pocket and global protein structure models by small structure patterns. BCB 2015: 355-365 - [c4]Xuefeng Cui, Hammad Naveed, Xin Gao
Pairwise structure alignment specifically tuned for surface pockets and interaction interfaces. BCB 2015: 507-508 - 2014
- [j3]Xuefeng Cui, Shuai Cheng Li
Fingerprinting protein structures effectively and efficiently. Bioinform. 30(7): 949-955 (2014) - 2013
- [j2]Xuefeng Cui, Shuai Cheng Li
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles? Algorithms Mol. Biol. 8: 5 (2013) - [j1]Lijuan Miao, Yibo Luan, Xiangzhong Luo
Analysis of the Phenology in the Mongolian Plateau by Inter-Comparison of Global Vegetation Datasets. Remote. Sens. 5(10): 5193-5208 (2013) - [c3]Xuefeng Cui, Shuai Cheng Li
Towards Reliable Automatic Protein Structure Alignment. WABI 2013: 18-32 - 2012
- [c2]Xuefeng Cui, Shuai Cheng Li
How Accurately Can We Model Protein Structures with Dihedral Angles? WABI 2012: 274-287
2000 – 2009
- 2007
- [c1]Xuefeng Cui, Tomás Vinar
Homology search for genes. ISMB/ECCB (Supplement of Bioinformatics) 2007: 97-103
Coauthor Index
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last updated on 2024-12-13 19:11 CET by the dblp team
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