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Miguel O. Bernabeu
Miguel Oscar Bernabeu
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2020 – today
- 2025
- [j19]Mojtaba Lashgari
, Zheyi Yang, Miguel O. Bernabeu
SpinDoctor-IVIM: A virtual imaging framework for intravoxel incoherent motion MRI. Medical Image Anal. 99: 103369 (2025) - 2024
- [c21]Ben Philps
Stochastic Uncertainty Quantification Techniques Fail to Account for Inter-analyst Variability in White Matter Hyperintensity Segmentation. MIUA (1) 2024: 34-53 - [i19]Justin Engelmann, Diana Moukaddem, Lucas Gago, Niall C. Strang, Miguel O. Bernabeu:
Applicability of oculomics for individual risk prediction: Repeatability and robustness of retinal Fractal Dimension using DART and AutoMorph. CoRR abs/2403.06950 (2024) - [i18]Justin Engelmann, Miguel O. Bernabeu:
Training a high-performance retinal foundation model with half-the-data and 400 times less compute. CoRR abs/2405.00117 (2024) - [i17]Jamie Burke, Justin Engelmann, Charlene Hamid, Diana Moukaddem, Dan Pugh, Neeraj Dhaun, Amos J. Storkey, Niall C. Strang, Stuart King, Tom J. MacGillivray, Miguel O. Bernabeu, Ian J. C. MacCormick:
Domain-specific augmentations with resolution agnostic self-attention mechanism improves choroid segmentation in optical coherence tomography images. CoRR abs/2405.14453 (2024) - [i16]Jesse Phitidis, Alison Q. O'Neil, William Whiteley, Beatrice Alex, Joanna M. Wardlaw, Miguel O. Bernabeu, Maria del C. Valdés Hernández:
Automated neuroradiological support systems for multiple cerebrovascular disease markers - A systematic review and meta-analysis. CoRR abs/2410.17124 (2024) - 2023
- [j18]Nusa Faric
Early experiences of integrating an artificial intelligence-based diagnostic decision support system into radiology settings: a qualitative study. J. Am. Medical Informatics Assoc. 31(1): 24-34 (2023) - [j17]Jessica R. Crawshaw
Mathematical models of developmental vascular remodelling: A review. PLoS Comput. Biol. 19(8) (2023) - [c20]Nusa Faric
Early Experiences of Integrating an Artificial Intelligence-Based Diagnostic Decision Support System into Radiology Settings: A Qualitative Study. EFMI-STC 2023: 240-241 - [c19]Darwon Rashid, Ylenia Giarratano, Charlene Hamid, Thomas J. MacGillivray, Graciela Terrera Muniz, Craig Ritchie, Baljean Dhillon, Megan Reid-Schachter, Audrey Low, Maria-Eleni Dounavi, John T. O'Brien, Miguel O. Bernabeu:
Associations Between Retinal Microvasculature Changes and Gray Matter Volume in a Mid-Life Cohort at Risk of Developing Alzheimer's Disease. OMIA@MICCAI 2023: 1-10 - [c18]Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu:
QuickQual: Lightweight, Convenient Retinal Image Quality Scoring with Off-the-Shelf Pretrained Models. OMIA@MICCAI 2023: 32-41 - [c17]Fabian S. L. Yii, Thomas J. MacGillivray, Miguel O. Bernabeu:
Data Efficiency of Segment Anything Model for Optic Disc and Cup Segmentation. MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI 2023: 336-346 - [c16]Jesse Phitidis
Segmentation of White Matter Hyperintensities and Ischaemic Stroke Lesions in Structural MRI. MIUA 2023: 3-17 - [i15]Jamie Burke
Efficient and fully-automatic retinal choroid segmentation in OCT through DL-based distillation of a hand-crafted pipeline. CoRR abs/2307.00904 (2023) - [i14]Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu:
QuickQual: Lightweight, convenient retinal image quality scoring with off-the-shelf pretrained models. CoRR abs/2307.13646 (2023) - [i13]Justin Engelmann, Jamie Burke, Charlene Hamid, Megan Reid-Schachter, Dan Pugh, Neeraj Dhaun, Diana Moukaddem, Lyle Gray, Niall C. Strang, Paul McGraw, Amos J. Storkey, Paul J. Steptoe, Stuart King, Tom J. MacGillivray, Miguel O. Bernabeu, Ian J. C. MacCormick:
Choroidalyzer: An open-source, end-to-end pipeline for choroidal analysis in optical coherence tomography. CoRR abs/2312.02956 (2023) - 2022
- [j16]Justin Engelmann
Detecting multiple retinal diseases in ultra-widefield fundus imaging and data-driven identification of informative regions with deep learning. Nat. Mac. Intell. 4(12): 1143-1154 (2022) - [c15]Darwon Rashid, Ylenia Giarratano, Charlene Hamid, Thomas J. MacGillivray
Analysing Optical Coherence Tomography Angiography of Mid-Life Persons at Risk of Developing Alzheimer's Disease Later in Life. OMIA@MICCAI 2022: 12-21 - [c14]Fabian S. L. Yii, Raman Dutt, Thomas J. MacGillivray
Rethinking Retinal Image Quality: Treating Quality Threshold as a Tunable Hyperparameter. OMIA@MICCAI 2022: 73-83 - [c13]Justin Engelmann, Ana Villaplana-Velasco, Amos J. Storkey, Miguel O. Bernabeu:
Robust and Efficient Computation of Retinal Fractal Dimension Through Deep Approximation. OMIA@MICCAI 2022: 84-93 - [i12]Justin Engelmann, Alice D. McTrusty, Ian J. C. MacCormick, Emma Pead, Amos J. Storkey, Miguel O. Bernabeu:
Detection of multiple retinal diseases in ultra-widefield fundus images using deep learning: data-driven identification of relevant regions. CoRR abs/2203.06113 (2022) - [i11]Justin Engelmann, Ana Villaplana-Velasco, Amos J. Storkey, Miguel O. Bernabeu:
Robust and efficient computation of retinal fractal dimension through deep approximation. CoRR abs/2207.05757 (2022) - 2021
- [j15]Lowell T. Edgar
On the preservation of vessel bifurcations during flow-mediated angiogenic remodelling. PLoS Comput. Biol. 17(2) (2021) - [c12]Darwon Rashid, Sophie Cai, Ylenia Giarratano, Calum D. Gray
Reproducibility of Retinal Vascular Phenotypes Obtained with Optical Coherence Tomography Angiography: Importance of Vessel Segmentation. MIUA 2021: 238-249 - [i10]Gabriele Beltramo, Rayna Andreeva, Ylenia Giarratano, Miguel O. Bernabeu, Rik Sarkar, Primoz Skraba:
Euler Characteristic Surfaces. CoRR abs/2102.08260 (2021) - [i9]Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu:
Global explainability in aligned image modalities. CoRR abs/2112.09591 (2021) - 2020
- [j14]Fergus R. Cooper
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5(47): 1848 (2020) - [c11]Rayna Andreeva
DR Detection Using Optical Coherence Tomography Angiography (OCTA): A Transfer Learning Approach with Robustness Analysis. OMIA@MICCAI 2020: 11-20 - [c10]Ylenia Giarratano, Alisa Pavel
A Framework for the Discovery of Retinal Biomarkers in Optical Coherence Tomography Angiography (OCTA). OMIA@MICCAI 2020: 155-164
2010 – 2019
- 2019
- [i8]Ylenia Giarratano, Eleonora Bianchi, Calum D. Gray, Andrew Morris, Tom J. MacGillivray, Baljean Dhillon, Miguel O. Bernabeu:
Automated and Network Structure Preserving Segmentation of Optical Coherence Tomography Angiograms. CoRR abs/1912.09978 (2019) - 2018
- [c9]James M. Osborne, Miguel O. Bernabeu:
A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling. EMBC 2018: 4552-4555 - 2015
- [j13]Mohamed A. Itani, Ulf D. Schiller
An automated multiscale ensemble simulation approach for vascular blood flow. J. Comput. Sci. 9: 150-155 (2015) - [j12]Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11(4) (2015) - [c8]Miguel O. Bernabeu, Yang Lu, Jan Lammer, Lloyd Paul Aiello, Peter V. Coveney, Jennifer K. Sun
Characterization of parafoveal hemodynamics associated with diabetic retinopathy with adaptive optics scanning laser ophthalmoscopy and computational fluid dynamics. EMBC 2015: 8070-8073 - [i7]Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen:
An automated multiscale ensemble simulation approach for vascular blood flow. CoRR abs/1504.07795 (2015) - 2014
- [j11]Miguel O. Bernabeu, James Southern, Nicholas Wilson, Peter E. Strazdins, Jonathan Cooper
Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. Int. J. High Perform. Comput. Appl. 28(1): 13-32 (2014) - [j10]James M. Osborne
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10(3) (2014) - [c7]Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros
Weighted Decomposition in High-Performance Lattice-Boltzmann Simulations: Are Some Lattice Sites More Equal than Others? EASC 2014: 28-38 - [i6]Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney:
Weighted decomposition in high-performance lattice-Boltzmann simulations: are some lattice sites more equal than others? CoRR abs/1410.4713 (2014) - 2013
- [j9]Derek Groen
Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment. J. Comput. Sci. 4(5): 412-422 (2013) - [j8]Gary R. Mirams
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9(3) (2013) - [i5]Miguel O. Bernabeu, Claudio A. Franco, Martin Jones, Jens H. Nielsen, Timm Krüger, Rupert W. Nash, Derek Groen, James Hetherington, Holger Gerhardt, Peter V. Coveney:
Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis. CoRR abs/1311.1640 (2013) - 2012
- [i4]Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney:
Analyzing and Modeling the Performance of the HemeLB Lattice-Boltzmann Simulation Environment. CoRR abs/1209.3972 (2012) - [i3]Hywel B. Carver, Derek Groen, James Hetherington, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney:
Coalesced communication: a design pattern for complex parallel scientific software. CoRR abs/1210.4400 (2012) - [i2]Derek Groen, Joris Borgdorff, Carles Bona-Casas, James Hetherington, Rupert W. Nash, Stefan J. Zasada, Ilya Saverchenko, Mariusz Mamonski, Krzysztof Kurowski, Miguel O. Bernabeu, Alfons G. Hoekstra, Peter V. Coveney:
Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations. CoRR abs/1211.2963 (2012) - [i1]Miguel O. Bernabeu, Rupert W. Nash, Derek Groen, Hywel B. Carver, James Hetherington, Timm Krüger, Peter V. Coveney:
Choice of blood rheology model has minor impact on computational assessment of shear stress mediated vascular risk. CoRR abs/1211.5292 (2012) - 2011
- [j7]Pedro Alonso
Implementation and tuning of a parallel symmetric Toeplitz eigensolver. J. Parallel Distributed Comput. 71(3): 485-494 (2011) - [c6]Nejib Zemzemi
Simulating Drug-Induced Effects on the Heart: From Ion Channel to Body Surface Electrocardiogram. FIMH 2011: 259-266 - [c5]Miguel O. Bernabeu, David Kay:
Scalable parallel preconditioners for an open source cardiac electrophysiology simulation package. ICCS 2011: 821-830 - 2010
- [j6]James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis
Simulating cardiac electrophysiology using anisotropic mesh adaptivity. J. Comput. Sci. 1(2): 82-88 (2010) - [j5]Miguel O. Bernabeu, Pras Pathmanathan, Joe Pitt-Francis
Stimulus Protocol Determines the Most Computationally Efficient Preconditioner for the Bidomain Equations. IEEE Trans. Biomed. Eng. 57(12): 2806-2815 (2010) - [c4]James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis
Anisotropic mesh adaptivity for cardiac electrophysiology. ICCS 2010: 935-944
2000 – 2009
- 2009
- [j4]Joe Pitt-Francis
Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. 180(12): 2452-2471 (2009) - 2008
- [j3]Antonio M. Vidal
Parallel computation of the eigenvalues of symmetric Toeplitz matrices through iterative methods. J. Parallel Distributed Comput. 68(8): 1113-1121 (2008) - [j2]Miguel Oscar Bernabeu, Pedro Alonso
A multilevel parallel algorithm to solve symmetric Toeplitz linear systems. J. Supercomput. 44(3): 237-256 (2008) - 2007
- [j1]Miguel O. Bernabeu, Mariam Taroncher, Víctor M. García, Ana Vidal:
Robust Parallel Implementation of a Lanczos-based Algorithm for an Structured Electromagnetic Eigenvalue Problem. Scalable Comput. Pract. Exp. 8(3) (2007) - [c3]Pedro Alonso
An Adaptive Interface for the Efficient Computation of the Discrete Sine Transform. PPAM 2007: 89-98 - 2006
- [c2]Pedro Alonso
A Parallel Solution of Hermitian Toeplitz Linear Systems, . International Conference on Computational Science (1) 2006: 348-355 - [c1]Miguel Oscar Bernabeu, Mariam Taroncher
Parallel Implementation in PC Clusters of a Lanczos-based Algorithm for an Electromagnetic Eigenvalue Problem. ISPDC 2006: 296-300
Coauthor Index
Thomas J. MacGillivray
aka: Tom J. MacGillivray
aka: Tom J. MacGillivray
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