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Jari Björne
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- affiliation: University of Turku, Finland
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2020 – today
- 2023
- [c18]Samuli Laato
, Benedikt Morschheuser
AI-Assisted Learning with ChatGPT and Large Language Models: Implications for Higher Education. ICALT 2023: 226-230 - 2022
- [j13]Kai Hakala
Neural Network and Random Forest Models in Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1772-1781 (2022) - [c17]Samuli Laato
Striving for platform independence in the e-learning landscape: a study on a flexible exercise creation system. ICALT 2022: 46-48 - 2021
- [j12]Olga Majewska
BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine. J. Biomed. Semant. 12(1): 12 (2021) - [c16]Hans Moen, Dari AlHuwail, Jari Björne, Lori Block, Sven Celin, Eunjoo Jeon, Karl Kreiner
Towards Automated Screening of Literature on Artificial Intelligence in Nursing. MedInfo 2021: 637-640 - 2020
- [c15]Samuli Laato
Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module. FIE 2020: 1-9
2010 – 2019
- 2018
- [j11]Farrokh Mehryary
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction. Database J. Biol. Databases Curation 2018: bay120 (2018) - [c14]Jari Björne, Tapio Salakoski:
Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing. BioNLP 2018: 98-108 - [c13]Murhaf Fares, Stephan Oepen, Lilja Øvrelid, Jari Björne, Richard Johansson:
The 2018 Shared Task on Extrinsic Parser Evaluation: On the Downstream Utility of English Universal Dependency Parsers. CoNLL Shared Task (2) 2018: 22-33 - 2017
- [c12]Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter:
End-to-End System for Bacteria Habitat Extraction. BioNLP 2017: 80-90 - 2016
- [c11]Farrokh Mehryary, Jari Björne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter:
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016. BioNLP (Shared Task) 2016: 73-81 - [c10]Jari Björne, Tapio Salakoski:
UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED). SemEval@NAACL-HLT 2016: 925-930 - 2015
- [j10]Jari Björne, Tapio Salakoski:
TEES 2.2: Biomedical Event Extraction for Diverse Corpora. BMC Bioinform. 16(S16): S4 (2015) - 2013
- [c9]Jari Björne, Tapio Salakoski:
TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task. BioNLP@ACL (Shared Task) 2013: 16-25 - [c8]Jari Björne, Suwisa Kaewphan, Tapio Salakoski:
UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge. SemEval@NAACL-HLT 2013: 651-659 - 2012
- [j9]Jari Björne, Filip Ginter, Tapio Salakoski:
University of Turku in the BioNLP'11 Shared Task. BMC Bioinform. 13(S-11): S4 (2012) - [j8]Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer
Semantically linking molecular entities in literature through entity relationships. BMC Bioinform. 13(S-11): S6 (2012) - [c7]Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski:
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. BioNLP@HLT-NAACL 2012: 82-90 - 2011
- [j7]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - [j6]Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola
Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets. Comput. Intell. 27(4): 541-557 (2011) - [c6]Jari Björne, Tapio Salakoski:
Generalizing Biomedical Event Extraction. BioNLP@ACL (Shared Task) 2011: 183-191 - 2010
- [j5]Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski:
Complex event extraction at PubMed scale. Bioinform. 26(12): 382-390 (2010) - [j4]Filip Ginter, Jari Björne, Sampo Pyysalo:
Event extraction on PubMed scale. BMC Bioinform. 11(S-5): O2 (2010) - [c5]Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski:
Scaling up Biomedical Event Extraction to the Entire PubMed. BioNLP@ACL 2010: 28-36 - [c4]Juho Heimonen, Jari Björne, Tapio Salakoski:
Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain. BioNLP@ACL 2010: 108-116
2000 – 2009
- 2009
- [c3]Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski:
Extracting Complex Biological Events with Rich Graph-Based Feature Sets. BioNLP@HLT-NAACL (Shared Task) 2009: 10-18 - [c2]Jari Björne, Filip Ginter, Juho Heimonen, Sampo Pyysalo, Tapio Salakoski:
Learning to Extract Biological Event and Relation Graphs. NODALIDA 2009: 18-25 - 2008
- [j3]Antti Airola
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning. BMC Bioinform. 9(S-11) (2008) - [j2]Sampo Pyysalo, Antti Airola
Comparative analysis of five protein-protein interaction corpora. BMC Bioinform. 9(S-3) (2008) - [c1]Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski:
A Graph Kernel for Protein-Protein Interaction Extraction. BioNLP 2008: 1-9 - 2007
- [j1]Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen
BioInfer: a corpus for information extraction in the biomedical domain. BMC Bioinform. 8 (2007)
Coauthor Index
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