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Gürkan Bebek
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2020 – today
- 2021
- [c7]Arda Durmaz, Tim A. D. Henderson, Gürkan Bebek:
Frequent Subgraph Mining of Functional Interaction Patterns Across Multiple Cancers. PSB 2021
2010 – 2019
- 2017
- [c6]Arda Durmaz, Tim A. D. Henderson, Douglas Brubaker, Gürkan Bebek:
Frequent Subgraph Mining of Personalized Signaling Pathway Networks Groups Patients with Frequently Dysregulated Disease Pathways and Predicts Prognosis. PSB 2017 - 2014
- [c5]Douglas Brubaker, Analisa Difeo, Yanwen Chen, Taylor Pearl, Kaide Zhai, Gürkan Bebek, Mark R. Chance, Jill S. Barnholtz-Sloan:
Drug Intervention Response Predictions with Paradigm (DIRPP) Identifies Drug Resistant Cancer Cell Lines and Pathway Mechanisms of Resistance. Pacific Symposium on Biocomputing 2014: 125-135 - 2013
- [c4]Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance:
Session introduction. Pacific Symposium on Biocomputing 2013: 307-309 - 2012
- [j10]Gürkan Bebek, Mehmet Koyutürk
, Nathan D. Price
Network biology methods integrating biological data for translational science. Briefings Bioinform. 13(4): 446-459 (2012) - [j9]George C. Linderman
MAGNET: MicroArray Gene expression and Network Evaluation Toolkit. Nucleic Acids Res. 40(Web-Server-Issue): 152-156 (2012) - 2011
- [j8]Sinan Erten, Gürkan Bebek, Rob M. Ewing
DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization. BioData Min. 4: 19 (2011) - [j7]George C. Linderman
BiC: a web server for calculating bimodality of coexpression between gene and protein networks. Bioinform. 27(8): 1174-1175 (2011) - [j6]Sinan Erten, Gürkan Bebek, Mehmet Koyutürk
Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks. J. Comput. Biol. 18(11): 1561-1574 (2011) - [j5]Gürkan Bebek, Mohammed Orloff, Charis Eng:
Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma. J. Clin. Bioinform. 1: 21 (2011) - [c3]Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price:
Session Introduction. Pacific Symposium on Biocomputing 2011: 1-3 - [c2]Sinan Erten, Gürkan Bebek, Mehmet Koyutürk
Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks. RECOMB 2011: 54-68 - 2010
- [j4]Gürkan Bebek, Vishal N. Patel, Mark R. Chance:
PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling. BMC Bioinform. 11: 596 (2010)
2000 – 2009
- 2009
- [j3]Sinan Erten, Xin Li, Gürkan Bebek, Jing Li
Phylogenetic analysis of modularity in protein interaction networks. BMC Bioinform. 10: 333 (2009) - 2007
- [j2]Gürkan Bebek, Jiong Yang:
PathFinder: mining signal transduction pathway segments from protein-protein interaction networks. BMC Bioinform. 8 (2007) - 2006
- [j1]Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky
The degree distribution of the generalized duplication model. Theor. Comput. Sci. 369(1-3): 239-249 (2006) - 2005
- [c1]Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp:
Improved Duplication Models for Proteome Network Evolution. Systems Biology and Regulatory Genomics 2005: 119-137
Coauthor Index
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