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Richard H. Scheuermann
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2020 – today
- 2023
- [j29]Edgar E. Robles
, Ye Jin
A cell-level discriminative neural network model for diagnosis of blood cancers. Bioinform. 39(10) (2023) - [j28]Robert D. Olson, Rida Assaf, Thomas S. Brettin, Neal Conrad, Clark Cucinell, James J. Davis
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. Nucleic Acids Res. 51(D1): 678-689 (2023) - 2022
- [j27]Yun Zhang
FastMix: a versatile data integration pipeline for cell type-specific biomarker inference. Bioinform. 38(20): 4735-4744 (2022) - [j26]Zachary S. Wallace
Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation. Frontiers Bioinform. 2 (2022) - 2021
- [j25]Yun Zhang
FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test. Briefings Bioinform. 22(4) (2021) - [j24]Randi Vita
Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021) - [c9]Richard H. Scheuermann:
Abstract: Explainable artificial intelligence and single cell genomics to understand the cellular complexity of human brain. BIBM 2021: 4
2010 – 2019
- 2018
- [c8]Disi Ji, Eric T. Nalisnick, Yu Qian, Richard H. Scheuermann, Padhraic Smyth:
Bayesian Trees for Automated Cytometry Data Analysis. MLHC 2018: 465-483 - 2017
- [j23]Scott Christley, Mikhail K. Levin, Inimary T. Toby, John M. Fonner, Nancy Monson, William Rounds, Florian Rubelt
VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data. BMC Bioinform. 18(1): 448:1-448:5 (2017) - [j22]Trygve E. Bakken
Cell type discovery and representation in the era of high-content single cell phenotyping. BMC Bioinform. 18(S-17): 7-16 (2017) - [j21]Yun Zhang
Influenza Research Database: An integrated bioinformatics resource for influenza virus research. Nucleic Acids Res. 45(Database-Issue): D466-D474 (2017) - [c7]Brian D. Aevermann, Jamison M. McCorrison, Pratap Venepally, Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Mark Novotny, Danny N. Tran, Francisco Diez-Fuertes, Lena Christiansen, Fan Zhang, Frank Steemers, Roger S. Lasken, Ed S. Lein, Nicholas J. Schork, Richard H. Scheuermann:
Production of a Preliminary Quality Control Pipeline for Single Nuclei RNA-Seq and Its Application in the Analysis of Cell Type Diversity of Post-Mortem Human Brain Neocortex. PSB 2017: 564-575 - 2016
- [j20]Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. BMC Bioinform. 17(S-13): 333 (2016) - 2015
- [j19]Mélanie Courtot
flowCL: ontology-based cell population labelling in flow cytometry. Bioinform. 31(8): 1337-1339 (2015) - [c6]Yu Qian, Hyunsoo Kim, Shweta Purawat, Jianwu Wang, Rick Stanton, Alexandra Lee
FlowGate: towards extensible and scalable web-based flow cytometry data analysis. XSEDE 2015: 5:1-5:8 - 2013
- [j18]Josef Spidlen, Aaron Barsky, Karin Breuer, Peter Carr, Marc-Danie Nazaire, Barbara A. Hill, Yu Qian, Ted Liefeld, Michael Reich
GenePattern Flow Cytometry Suite. Source Code Biol. Medicine 8: 14 (2013) - 2012
- [j17]Brett E. Pickett
ViPR: an open bioinformatics database and analysis resource for virology research. Nucleic Acids Res. 40(Database-Issue): 593-598 (2012) - [c5]Kirk Roberts, Bryan Rink, Sanda M. Harabagiu, Richard H. Scheuermann, Seth M. Toomay, Travis Browning, Teresa Bosler, Ronald M. Peshock:
A Machine Learning Approach for Identifying Anatomical Locations of Actionable Findings in Radiology Reports. AMIA 2012 - 2011
- [j16]Philippe Rocca-Serra, Alan Ruttenberg
Overcoming the ontology enrichment bottleneck with Quick Term Templates. Appl. Ontology 6(1): 13-22 (2011) - [j15]Barry Smith
Ontologies for clinical and translational research: Introduction. J. Biomed. Informatics 44(1): 3-7 (2011) - [j14]Y. Megan Kong, Carl Dahlke, Qun Xiang, Yu Qian, David R. Karp, Richard H. Scheuermann
Toward an ontology-based framework for clinical research databases. J. Biomed. Informatics 44(1): 48-58 (2011) - [j13]Alexander D. Diehl
Hematopoietic cell types: Prototype for a revised cell ontology. J. Biomed. Informatics 44(1): 75-79 (2011) - 2010
- [j12]Song Zhang, Jing Cao, Y. Megan Kong, Richard H. Scheuermann
GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach. Bioinform. 26(7): 905-911 (2010) - [j11]Roger L. Chang
Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks. Int. J. Bioinform. Res. Appl. 6(2): 101-119 (2010) - [j10]Zhongxue Chen
Identifying Differentially Expressed Genes based on probe level data for GeneChip arrays. Int. J. Comput. Biol. Drug Des. 3(3): 237-257 (2010) - [c4]Glenys Thomson, Nishanth Marthandan, Jill A. Hollenbach, Steven J. Mack, Henry A. Erlich, Richard M. Single, Matthew J. Waller, Steven G. E. Marsh, Paula A. Guidry, David R. Karp, Richard H. Scheuermann, Susan D. Thompson, David N. Glass, Wolfgang Helmberg:
Sequence Feature Variant Type (SFVT) Analysis of the HLA Genetic Association in Juvenile Idiopathic Arthritis. Pacific Symposium on Biocomputing 2010: 359-370
2000 – 2009
- 2009
- [j9]Feng Luo, Bo Li, Xiu-Feng Wan, Richard H. Scheuermann
Core and periphery structures in protein interaction networks. BMC Bioinform. 10(S-4) (2009) - [j8]Anna Maria Masci
An improved ontological representation of dendritic cells as a paradigm for all cell types. BMC Bioinform. 10 (2009) - [j7]Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones
FuGEFlow: data model and markup language for flow cytometry. BMC Bioinform. 10 (2009) - [c3]Simona Carini, Brad Pollock, Harold P. Lehmann, Suzanne Bakken, Edward M. Barbour, Davera Gabriel, Herbert K. Hagler, Caryn R. Harper, Shamim Mollah, Meredith Nahm, Hien H. Nguyen, Richard H. Scheuermann, Ida Sim:
Development and Evaluation of a Study Design Typology for Human Research. AMIA 2009 - 2008
- [j6]R. Burke Squires
BioHealthBase: informatics support in the elucidation of influenza virus host-pathogen interactions and virulence. Nucleic Acids Res. 36(Database-Issue): 497-503 (2008) - [c2]Thomas Grindinger, Feng Luo, Xiu-Feng Wan, Richard H. Scheuermann
Exploring Core/Periphery Structures in Protein Interaction Networks Provides Structure-Property Relation Insights. BIBM 2008: 179-186 - 2007
- [j5]Feng Luo, Yunfeng Yang, Chin-Fu Chen, Roger L. Chang
Modular organization of protein interaction networks. Bioinform. 23(2): 207-214 (2007) - [j4]Zhongxue Chen
A distribution free summarization method for Affymetrix GeneChip® arrays. Bioinform. 23(3): 321-327 (2007) - [j3]Alexander D. Diehl
Ontology development for biological systems: immunology. Bioinform. 23(7): 913-915 (2007) - [j2]Feng Luo, Yunfeng Yang, Chin-Fu Chen, Roger L. Chang, Jizhong Zhou
Modular organization of protein interaction networks. Bioinform. 23(7): 916 (2007) - 2006
- [j1]Jamie A. Lee, Robert S. Sinkovits
Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation. BMC Bioinform. 7: 237 (2006) - [c1]Feng Luo, Richard H. Scheuermann
Detecting Functional Modules from Protein Interaction Networks. IMSCCS (1) 2006: 123-130
Coauthor Index
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