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Andrew D. Smith
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2020 – today
- 2024
- [j30]Henry J. Paiste, Ryan Godwin, Andrew D. Smith
, Dan E. Berkowitz, Ryan L. Melvin:
Strengths-weaknesses-opportunities-threats analysis of artificial intelligence in anesthesiology and perioperative medicine. Frontiers Digit. Health 6 (2024) - 2023
- [j29]Masaru Nakajima
Counting Distinguishable RNA Secondary Structures. J. Comput. Biol. 30(10): 1089-1097 (2023) - [j28]Asser M. Abou Elkassem
Pulmonary Surface Irregularity Score as a New Quantitative CT Marker for Idiopathic Pulmonary Fibrosis - a Pilot Study. J. Digit. Imaging 36(6): 2382-2391 (2023) - 2022
- [j27]Ryan L. Melvin, Matthew G. Broyles, Elizabeth W. Duggan, Sonia John, Andrew D. Smith
Artificial Intelligence in Perioperative Medicine: A Proposed Common Language With Applications to FDA-Approved Devices. Frontiers Digit. Health 4: 872675 (2022) - [j26]Alexander J. McNeil
On attainability of Kendall's tau matrices and concordance signatures. J. Multivar. Anal. 191: 105033 (2022) - 2020
- [j25]Saket Choudhary
Accurate detection of short and long active ORFs using Ribo-seq data. Bioinform. 36(7): 2053-2059 (2020) - [j24]Chao Deng, Timothy Daley, Peter Calabrese, Jie Ren, Andrew D. Smith:
Predicting the Number of Bases to Attain Sufficient Coverage in High-Throughput Sequencing Experiments. J. Comput. Biol. 27(7): 1130-1143 (2020)
2010 – 2019
- 2018
- [j23]Seth T. Lirette, Andrew D. Smith
A tool to visualize and analyze perfusion data: Development and application of the R package "CTP". Comput. Methods Programs Biomed. 153: 11-17 (2018) - 2017
- [j22]Wenzheng Li, Weili Wang, Philip J. Uren, Luiz O. F. Penalva
Riborex: fast and flexible identification of differential translation from Ribo-seq data. Bioinform. 33(11): 1735-1737 (2017) - 2016
- [j21]Haifeng Chen, Andrew D. Smith, Ting Chen:
WALT: fast and accurate read mapping for bisulfite sequencing. Bioinform. 32(22): 3507-3509 (2016) - 2015
- [j20]Chao Deng, Timothy Daley, Andrew D. Smith:
Applications of species accumulation curves in large-scale biological data analysis. Quant. Biol. 3(3): 135-144 (2015) - 2014
- [j19]Ehsan Behnam, Andrew D. Smith:
The Amordad database engine for metagenomics. Bioinform. 30(20): 2949-2955 (2014) - [j18]Timothy Daley, Andrew D. Smith:
Modeling genome coverage in single-cell sequencing. Bioinform. 30(22): 3159-3165 (2014) - [j17]Egor Dolzhenko, Andrew D. Smith:
Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments. BMC Bioinform. 15: 215 (2014) - 2013
- [j16]Jianghan Qu, Meng Zhou
MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation. Bioinform. 29(20): 2645-2646 (2013) - [j15]Ehsan Behnam, Michael S. Waterman, Andrew D. Smith
A Geometric Interpretation for Local Alignment-Free Sequence Comparison. J. Comput. Biol. 20(7): 471-485 (2013) - 2012
- [j14]Philip J. Uren, Emad Bahrami Samani, Suzanne C. Burns, Mei Qiao, Fedor V. Karginov, Emily Hodges
Site identification in high-throughput RNA-protein interaction data. Bioinform. 28(23): 3013-3020 (2012) - 2011
- [j13]Qiang Song
Identifying dispersed epigenomic domains from ChIP-Seq data. Bioinform. 27(6): 870-871 (2011) - [j12]Qian Peng, Andrew D. Smith
Multiple Sequence Assembly from Reads Alignable to a Common Reference Genome. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1283-1295 (2011)
2000 – 2009
- 2009
- [j11]Andrew D. Smith
Updates to the RMAP short-read mapping software. Bioinform. 25(21): 2841-2842 (2009) - [j10]Atsushi Niida, Andrew D. Smith
Gene set-based module discovery in the breast cancer transcriptome. BMC Bioinform. 10 (2009) - [j9]Michael Q. Zhang, Andrew D. Smith
Challenges in Understanding Genome-Wide DNA Methylation. J. Comput. Sci. Technol. 25(1): 26-34 (2009) - 2008
- [j8]Atsushi Niida, Andrew D. Smith
Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells. BMC Bioinform. 9 (2008) - [j7]Andrew D. Smith
Using quality scores and longer reads improves accuracy of Solexa read mapping. BMC Bioinform. 9 (2008) - 2007
- [j6]M. Juanita Martinez, Andrew D. Smith
Computational prediction of novel components of lung transcriptional networks. Bioinform. 23(1): 21-29 (2007) - [j5]Dustin E. Schones, Andrew D. Smith
Statistical significance of cis-regulatory modules. BMC Bioinform. 8 (2007) - 2005
- [j4]Pavel Sumazin, Gengxin Chen, Naoya Hata, Andrew D. Smith
DWE: Discriminating Word Enumerator. Bioinform. 21(1): 31-38 (2005) - [j3]Andy Pang, Andrew D. Smith
SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution. BMC Bioinform. 6: 236 (2005) - [c3]Andrew D. Smith
Mining ChIP-chip data for transcription factor and cofactor binding sites. ISMB (Supplement of Bioinformatics) 2005: 403-412 - 2003
- [j2]Shalini Veerassamy, Andrew D. Smith
A Transition Probability Model for Amino Acid Substitutions from Blocks. J. Comput. Biol. 10(6): 997-1010 (2003) - [j1]Patricia A. Evans, Andrew D. Smith
On the complexity of finding common approximate substrings. Theor. Comput. Sci. 306(1-3): 407-430 (2003) - [c2]Patricia A. Evans, Andrew D. Smith:
Complexity of Approximating Closest Substring Problems. FCT 2003: 210-221 - [c1]Patricia A. Evans, Andrew D. Smith:
Toward Optimal Motif Enumeration. WADS 2003: 47-58
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