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Ozgur E. Akman
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2020 – today
- 2023
- [j12]Ozgur E. Akman
, Kevin Doherty, Benjamin J. Wareham:
BDEtools: A MATLAB Package for Boolean Delay Equation Modeling. J. Comput. Biol. 30(1): 52-69 (2023) - [j11]Dominic M. Dunstan
Global nonlinear approach for mapping parameters of neural mass models. PLoS Comput. Biol. 19(3) (2023) - 2021
- [c10]Melike D. Karatas, Ozgur E. Akman, Jonathan E. Fieldsend:
Towards population-based fitness landscape analysis using local optima networks. GECCO Companion 2021: 1674-1682 - [p1]Khulood AlYahya, Kevin A. J. Doherty, Ozgur E. Akman, Jonathan E. Fieldsend:
Reduced Models of Gene Regulatory Networks: Visualising Multi-modal Landscapes. Metaheuristics for Finding Multiple Solutions 2021: 229-258 - 2020
- [j10]Richard A. Clement, Ozgur E. Akman
Slow-fast control of eye movements: an instance of Zeeman's model for an action. Biol. Cybern. 114(4-5): 519-532 (2020) - [j9]Mathias Foo
A simplified modelling framework facilitates more complex representations of plant circadian clocks. PLoS Comput. Biol. 16(3) (2020) - [j8]Eleftherios Avramidis
SODECL: An Open-Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in Parallel. ACM Trans. Math. Softw. 46(3): 24:1-24:21 (2020)
2010 – 2019
- 2019
- [c9]Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend:
Landscape analysis under measurement error. GECCO (Companion) 2019: 1415-1418 - [i1]Eleftherios Avramidis, Marta Lalik, Ozgur E. Akman:
SODECL: An Open Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in Parallel. CoRR abs/1908.03869 (2019) - 2018
- [c8]Kevin Anthony James Doherty, Khulood AlYahya, Jonathan E. Fieldsend, Ozgur E. Akman:
Voronoi-based archive sampling for robust optimisation. GECCO (Companion) 2018: 249-250 - [c7]Khulood AlYahya, Kevin Anthony James Doherty, Ozgur E. Akman, Jonathan E. Fieldsend:
Robust multi-modal optimisation. GECCO (Companion) 2018: 1783-1790 - 2017
- [j7]Eleftherios Avramidis, Ozgur E. Akman:
Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination. BMC Syst. Biol. 11(1): 40:1-40:23 (2017) - [c6]Khulood AlYahya, Kevin Anthony James Doherty, Jonathan E. Fieldsend, Ozgur E. Akman:
On the exploitation of search history and accumulative sampling in robust optimisation. GECCO (Companion) 2017: 185-186 - [c5]Kevin Anthony James Doherty, Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend
Optimisation and landscape analysis of computational biology models: a case study. GECCO (Companion) 2017: 1644-1651 - 2015
- [j6]Stuart Aitken, Alastair M. Kilpatrick
Dizzy-Beats: a Bayesian evidence analysis tool for systems biology. Bioinform. 31(11): 1863-1865 (2015) - 2014
- [c4]Suhaib Mohammed, Ozgur E. Akman, Zheng Rong Yang:
A consensus approach to predict regulatory interactions. BMEI 2014: 769-775 - 2013
- [j5]Richard R. Adams
SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology. Bioinform. 29(5): 664-665 (2013) - [j4]Stuart Aitken, Ozgur E. Akman:
Nested sampling for parameter inference in systems biology: application to an exemplar circadian model. BMC Syst. Biol. 7: 72 (2013) - 2012
- [c3]Francesco Montefusco
On the role of ultrasensitivity in biomolecular control systems. CDC 2012: 3602-3607 - 2010
- [j3]Ozgur E. Akman, David A. Rand
Robustness from flexibility in the fungal circadian clock. BMC Syst. Biol. 4: 88 (2010) - [c2]Ozgur E. Akman, Maria Luisa Guerriero, Laurence Loewe, Carl Troein:
Complementary approaches to understanding the plant circadian clock. FBTC 2010: 1-19
2000 – 2009
- 2009
- [c1]Ozgur E. Akman, Federica Ciocchetta, Andrea Degasperi
Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the Neurospora crassa Circadian Network. CMSB 2009: 52-67 - 2006
- [j2]Dmitry Laptev, Ozgur E. Akman, Richard A. Clement:
Stability of the saccadic oculomotor system. Biol. Cybern. 95(3): 281-287 (2006) - [j1]Ozgur E. Akman, David S. Broomhead, Richard A. Clement, Richard V. Abadi:
Nonlinear time series analysis of jerk congenital nystagmus. J. Comput. Neurosci. 21(2): 153-170 (2006)
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