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Jan A. Kors
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2020 – today
- 2024
- [j53]Tom M. Seinen
, Jan A. Kors, Erik M. van Mulligen, Egill A. Fridgeirsson, Katia M. C. Verhamme, Peter R. Rijnbeek
Using clinical text to refine unspecific condition codes in Dutch general practitioner EHR data. Int. J. Medical Informatics 189: 105506 (2024) - [j52]Tom M. Seinen
Annotation-preserving machine translation of English corpora to validate Dutch clinical concept extraction tools. J. Am. Medical Informatics Assoc. 31(8): 1725-1734 (2024) - [j51]Cynthia Yang
Impact of random oversampling and random undersampling on the performance of prediction models developed using observational health data. J. Big Data 11(1): 7 (2024) - [i5]Luis H. John, Chungsoo Kim, Jan A. Kors, Junhyuk Chang, Hannah Morgan-Cooper, Priya Desai, Chao Pang, Peter R. Rijnbeek, Jenna Marie Reps, Egill A. Fridgeirsson:
Comparison of deep learning and conventional methods for disease onset prediction. CoRR abs/2410.10505 (2024) - 2023
- [j50]Tom M. Seinen
The added value of text from Dutch general practitioner notes in predictive modeling. J. Am. Medical Informatics Assoc. 30(12): 1973-1984 (2023) - [c28]Cynthia Yang, Egill A. Fridgeirsson, Jan A. Kors, Jenna Marie Reps, Peter R. Rijnbeek, Jenna Wong, Ross D. Williams:
Does Using a Stacking Ensemble Method to Combine Multiple Base Learners Within a Database Improve Model Transportability? MIE 2023: 129-130 - [c27]Aniek F. Markus, Egill A. Fridgeirsson, Jan A. Kors, Katia M. C. Verhamme, Peter R. Rijnbeek:
Challenges of Estimating Global Feature Importance in Real-World Health Care Data. MIE 2023: 1057-1061 - 2022
- [j49]Aniek F. Markus
TreatmentPatterns: An R package to facilitate the standardized development and analysis of treatment patterns across disease domains. Comput. Methods Programs Biomed. 225: 107081 (2022) - [j48]Luis H. John, Jan A. Kors, Jenna Marie Reps, Patrick B. Ryan, Peter R. Rijnbeek:
Logistic regression models for patient-level prediction based on massive observational data: Do we need all data? Int. J. Medical Informatics 163: 104762 (2022) - [j47]Cynthia Yang
Trends in the conduct and reporting of clinical prediction model development and validation: a systematic review. J. Am. Medical Informatics Assoc. 29(5): 983-989 (2022) - [j46]Tom M. Seinen
Use of unstructured text in prognostic clinical prediction models: a systematic review. J. Am. Medical Informatics Assoc. 29(7): 1292-1302 (2022) - 2021
- [j45]Aniek F. Markus
The role of explainability in creating trustworthy artificial intelligence for health care: A comprehensive survey of the terminology, design choices, and evaluation strategies. J. Biomed. Informatics 113: 103655 (2021) - 2020
- [j44]Wytze J. Vlietstra
Identifying disease trajectories with predicate information from a knowledge graph. J. Biomed. Semant. 11(1): 9 (2020) - [i4]Aniek F. Markus, Jan A. Kors, Peter R. Rijnbeek:
The role of explainability in creating trustworthy artificial intelligence for health care: a comprehensive survey of the terminology, design choices, and evaluation strategies. CoRR abs/2007.15911 (2020) - [i3]Luis H. John, Jan A. Kors, Jenna Marie Reps, Patrick B. Ryan, Peter R. Rijnbeek:
How little data do we need for patient-level prediction? CoRR abs/2008.07361 (2020)
2010 – 2019
- 2019
- [j43]Saber A. Akhondi, Hinnerk Rey, Markus Schwörer, Michael Maier, John P. Toomey, Heike Nau, Gabriele Ilchmann, Mark Sheehan, Matthias Irmer, Claudia Bobach, Marius A. Doornenbal
Automatic identification of relevant chemical compounds from patents. Database J. Biol. Databases Curation 2019: baz001 (2019) - [c26]Wytze Vlietstra, Rein Vos, Erik M. van Mulligen, Jan A. Kors:
Using Predicate Information from a Knowledge Graph to Identify Disease Trajectories. AAAI Spring Symposium: Combining Machine Learning with Knowledge Engineering 2019 - 2018
- [j42]Wytze J. Vlietstra
Using predicate and provenance information from a knowledge graph for drug efficacy screening. J. Biomed. Semant. 9(1): 23:1-23:10 (2018) - 2017
- [j41]Wytze J. Vlietstra
Automated extraction of potential migraine biomarkers using a semantic graph. J. Biomed. Informatics 71: 178-189 (2017) - 2016
- [j40]Saber A. Akhondi, Ewoud Pons
Chemical entity recognition in patents by combining dictionary-based and statistical approaches. Database J. Biol. Databases Curation 2016 (2016) - [j39]Ewoud Pons
Extraction of chemical-induced diseases using prior knowledge and textual information. Database J. Biol. Databases Curation 2016 (2016) - [c25]Zubair Afzal
Concept Recognition in French Biomedical Text Using Automatic Translation. CLEF 2016: 162-173 - [c24]Erik M. van Mulligen, Zubair Afzal, Saber A. Akhondi, Dang Vo, Jan A. Kors:
Erasmus MC at CLEF eHealth 2016: Concept Recognition and Coding in French Texts. CLEF (Working Notes) 2016: 171-178 - [c23]Pablo López-García, Markus Kreuzthaler, Stefan Schulz, Daniel Scherr
SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data. eHealth 2016: 93-99 - [c22]Erik M. van Mulligen, Wytze Vlietstra, Rein Vos, Jan A. Kors:
Discovering Information from an Integrated Graph Database. SWAT4LS 2016 - 2015
- [j38]Jan A. Kors, Simon Clematide
A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC. J. Am. Medical Informatics Assoc. 22(5): 948-956 (2015) - [j37]Saber A. Akhondi, Sorel Muresan, Antony J. Williams
Ambiguity of non-systematic chemical identifiers within and between small-molecule databases. J. Cheminformatics 7: 54:1-54:10 (2015) - [j36]Saber A. Akhondi, Kristina M. Hettne
Recognition of chemical entities: combining dictionary-based and grammar-based approaches. J. Cheminformatics 7(S-1): S10 (2015) - [j35]Martin Krallinger
The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics 7(S-1): S2 (2015) - [c21]Philipp Daumke, Claudia Riede, Thomas Fassbender, Angel Honrado, Markus Kreuzthaler, Pablo López-García, Stefan Schulz, Erik M. van Mulligen, Herman van Haagen, Jan A. Kors, Hanney Gonna, Xinkai Wang, Elijah Behr:
SEMCARE - Semantic Data Platform for Healthcare. AMIA 2015 - [c20]Zubair Afzal, Saber A. Akhondi, Herman van Haagen, Erik M. van Mulligen, Jan A. Kors:
Biomedical Concept Recognition in French Text Using Automatic Translation of English Terms. CLEF (Working Notes) 2015 - [c19]Erik M. van Mulligen, Wytze Vlietstra, Rein Vos, Jan A. Kors:
Information from Semantic Integration of Texts and Databases. SWAT4LS 2015: 231-240 - 2014
- [j34]Quoc-Chinh Bui, Peter M. A. Sloot, Erik M. van Mulligen
A novel feature-based approach to extract drug-drug interactions from biomedical text. Bioinform. 30(23): 3365-3371 (2014) - [j33]Ning Kang, Bharat Singh, Quoc-Chinh Bui, Zubair Afzal
Knowledge-based extraction of adverse drug events from biomedical text. BMC Bioinform. 15: 64 (2014) - [j32]Zubair Afzal
ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus. BMC Bioinform. 15: 373 (2014) - [i2]Kristina M. Hettne
Explain your data by Concept Profile Analysis Web Services. F1000Research 3: 173 (2014) - 2013
- [j31]Ning Kang, Bharat Singh, Zubair Afzal
Using rule-based natural language processing to improve disease normalization in biomedical text. J. Am. Medical Informatics Assoc. 20(5): 876-881 (2013) - [j30]Zubair Afzal
Improving sensitivity of machine learning methods for automated case identification from free-text electronic medical records. BMC Medical Informatics Decis. Mak. 13: 30 (2013) - [c18]Quoc-Chinh Bui, David Campos, Erik M. van Mulligen, Jan A. Kors:
A fast rule-based approach for biomedical event extraction. BioNLP@ACL (Shared Task) 2013: 104-108 - [c17]Jan A. Kors, Simon Clematide, Saber A. Akhondi, Erik M. van Mulligen, Dietrich Rebholz-Schuhmann:
Creating Multilingual Gold Standard Corpora for Biomedical Concept Recognition. CLEF (Working Notes) 2013 - [c16]Erik M. van Mulligen, Quoc-Chinh Bui, Jan A. Kors:
Machine Translation of Bio-Thesauri. CLEF (Working Notes) 2013 - [c15]Dietrich Rebholz-Schuhmann, Simon Clematide
Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. CLEF 2013: 353-367 - [c14]Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors:
Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge. CLEF (Working Notes) 2013 - 2012
- [j29]Ning Kang, Erik M. van Mulligen
Training text chunkers on a silver standard corpus: can silver replace gold? BMC Bioinform. 13: 17 (2012) - [j28]Ning Kang, Zubair Afzal
Using an ensemble system to improve concept extraction from clinical records. J. Biomed. Informatics 45(3): 423-428 (2012) - [j27]Erik M. van Mulligen
The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships. J. Biomed. Informatics 45(5): 879-884 (2012) - [j26]Saber A. Akhondi, Jan A. Kors, Sorel Muresan:
Consistency of systematic chemical identifiers within and between small-molecule databases. J. Cheminformatics 4: 35 (2012) - [j25]Anna Bauer-Mehren, Erik M. van Mulligen, Paul Avillach, María del Carmen Carrascosa, Ricard García-Serna, Janet Piñero González
Automatic Filtering and Substantiation of Drug Safety Signals. PLoS Comput. Biol. 8(4) (2012) - [c13]Senay Kafkas, Ian Lewin, David Milward, Erik M. van Mulligen, Jan A. Kors, Udo Hahn, Dietrich Rebholz-Schuhmann:
CALBC: Releasing the Final Corpora. LREC 2012: 2923-2926 - 2011
- [j24]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2(S-5): S11 (2011) - [j23]Ning Kang, Erik M. van Mulligen
Comparing and combining chunkers of biomedical text. J. Biomed. Informatics 44(2): 354-360 (2011) - 2010
- [j22]Martijn J. Schuemie
GeneE: Gene and protein query expansion with disambiguation. Bioinform. 26(1): 147-148 (2010) - [j21]Kristina M. Hettne
Rewriting and suppressing UMLS terms for improved biomedical term identification. J. Biomed. Semant. 1: 5 (2010) - [j20]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes
Calbc Silver Standard Corpus. J. Bioinform. Comput. Biol. 8(1): 163-179 (2010) - [j19]Kristina M. Hettne
Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining. J. Cheminformatics 2: 3 (2010) - [j18]Kristina M. Hettne
Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining (Correction). J. Cheminformatics 2: 4 (2010) - [j17]Peter R. Rijnbeek, Jan A. Kors:
Finding a short and accurate decision rule in disjunctive normal form by exhaustive search. Mach. Learn. 80(1): 33-62 (2010) - [c12]Dietrich Rebholz-Schuhmann, Antonio José Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Katrin Tomanek, Elena Beisswanger, Udo Hahn:
The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers. LREC 2010 - [c11]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010 - [c10]Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors:
A Concept Annotation System for Clinical Records. SWAT4LS 2010 - [i1]Ning Kang, Rogier Barendse, Zubair Afzal, Bharat Singh, Martijn J. Schuemie, Erik M. van Mulligen, Jan A. Kors:
A Concept Annotation System for Clinical Records. CoRR abs/1012.1663 (2010)
2000 – 2009
- 2009
- [j16]Kristina M. Hettne
A dictionary to identify small molecules and drugs in free text. Bioinform. 25(22): 2983-2991 (2009) - 2008
- [j15]Martijn J. Schuemie
Jane: suggesting journals, finding experts. Bioinform. 24(5): 727-728 (2008) - [j14]Rob Jelier
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. BMC Bioinform. 9 (2008) - [j13]Rob Jelier
Literature-based concept profiles for gene annotation: The issue of weighting. Int. J. Medical Informatics 77(5): 354-362 (2008) - 2007
- [j12]Rob Jelier
Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation. BMC Bioinform. 8 (2007) - [j11]Martijn J. Schuemie, Barend Mons
Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. J. Biomed. Informatics 40(3): 316-324 (2007) - 2006
- [j10]Jan H. van Bemmel, Erik M. van Mulligen
Databases for knowledge discovery: Examples from biomedicine and health care. Int. J. Medical Informatics 75(3-4): 257-267 (2006) - 2005
- [j9]Marc Weeber, Jan A. Kors, Barend Mons
Online tools to support literature-based discovery in the life sciences. Briefings Bioinform. 6(3): 277-286 (2005) - [j8]Rob Jelier
Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes. Bioinform. 21(9): 2049-2058 (2005) - [j7]Bob J. A. Schijvenaars
Thesaurus-based disambiguation of gene symbols. BMC Bioinform. 6: 149 (2005) - [j6]Antoine Veldhoven, Don de Lange, Marcel Smid, Victor de Jager, Jan A. Kors, Guido Jenster
Storing, linking, and mining microarray databases using SRS. BMC Bioinform. 6: 192 (2005) - [j5]Martijn J. Schuemie, Jan A. Kors, Barend Mons
Word Sense Disambiguation in the Biomedical Domain: An Overview. J. Comput. Biol. 12(5): 554-565 (2005) - [c9]Bob J. A. Schijvenaars, Martijn J. Schuemie, Erik M. van Mulligen, Marc Weeber, Rob Jelier, Barend Mons, Jan A. Kors, Wessel Kraaij:
TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization. TREC 2005 - 2004
- [j4]Martijn J. Schuemie
Distribution of information in biomedical abstracts and full-text publications. Bioinform. 20(16): 2597-2604 (2004) - [j3]C. Christiaan van der Eijk, Erik M. van Mulligen
Constructing an associative concept space for literature-based discovery. J. Assoc. Inf. Sci. Technol. 55(5): 436-444 (2004) - [c8]Erik M. van Mulligen
Contextual Annotation of Web Pages for Interactive Browsing. MedInfo 2004: 94-98 - 2003
- [c7]Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, Erik M. van Mulligen, Barend Mons, Jan A. Kors:
Mining Microarray Datasets Aided by Knowledge Stored in Literature. AMIA 2003 - [c6]Bob J. A. Schijvenaars, Erik M. van Mulligen, Mario Diwersy, Marc Weeber, C. Christiaan van der Eijk, Rob Jelier, Jan A. Kors, Barend Mons:
Using Contextual Queries. AMIA 2003 - [c5]Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, Barend Mons, Rob Jelier, C. Christiaan van der Eijk, Jan A. Kors:
Ambiguity of Human Gene Symbols in LocusLink and MEDLINE: Creating an Inventory and a Disambiguation Test Collection. AMIA 2003 - [c4]Rob Jelier, Martijn J. Schuemie, C. Christiaan van der Eijk, Marc Weeber, Erik M. van Mulligen, Bob J. A. Schijvenaars, Barend Mons, Jan A. Kors:
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification. TREC 2003: 225-233 - 2002
- [c3]Erik M. van Mulligen, C. Christiaan van der Eijk, Jan A. Kors, Bob J. A. Schijvenaars, Barend Mons:
Research for research: tools for knowledge discovery and visualization. AMIA 2002 - 2001
- [c2]Bob J. A. Schijvenaars, Jan A. Kors, Gerard van Herpen, Jan H. van Bemmel:
Employment of Intra-Individual Variability to Improve Computerized ECG Interpretation. MedInfo 2001: 513-517 - [c1]Jan A. Kors, Gerard van Herpen:
The Coming of Age of Computerized ECG Processing: Can it Replace the Cardiologist in Epidemiological Studies and Clinical Trials? MedInfo 2001: 1161-1165
1990 – 1999
- 1997
- [j2]Jan A. Kors, A. L. Hoffmann:
Induction of decision rules that fulfil user-specified performance requirements. Pattern Recognit. Lett. 18(11-13): 1187-1195 (1997)
1980 – 1989
- 1986
- [j1]Jan L. Talmon, Jan A. Kors, Jan H. van Bemmel:
Adaptive Gaussian filtering in routine ECG/VCG analysis. IEEE Trans. Acoust. Speech Signal Process. 34(3): 527-534 (1986)
Coauthor Index
[j53] [j52] [j50] [j46] [j44] [c26] [j42] [j41] [j40] [j39] [c25] [c24] [c23] [c22] [j38] [j36] [c21] [c20] [c19] [j34] [j33] [i2] [j31] [c18] [c17] [c16] [c15] [c14] [j29] [j28] [j27] [j25] [c13] [j24] [j23] [j21] [j20] [j19] [j18] [c12] [c11] [c10] [i1] [j16] [j13] [j10] [j8] [j7] [c9] [j4] [j3] [c8] [c7] [c6] [c5] [c4] [c3]
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