More Web Proxy on the site http://driver.im/

default search action

combined dblp search
author search
venue search
publication search

ask others

René L. Warren

> Home > Persons

Person information

Refine list

refinements active!

zoomed in on ?? of ?? records

view refined list in

export refined list as

showing all ?? records

2020 – today

see FAQ

What is the meaning of the colors in the publication lists?

2022
[j21]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/KazemiWNMWB22
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/KazemiWNMWB22
Parham Kazemi, Johnathan Wong, Vladimir Nikolic, Hamid Mohamadi, René L. Warren, Inanç Birol:
ntHash2: recursive spaced seed hashing for nucleotide sequences. Bioinform. 38(20): 4812-4813 (2022)
[j20]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bmcbi/NikolicACWCNWB22
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bmcbi/NikolicACWCNWB22
Vladimir Nikolic, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol:
RResolver: efficient short-read repeat resolution within ABySS. BMC Bioinform. 23(1): 246 (2022)
[j19]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/jossw/NikolicKCWACWB22
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/jossw/NikolicKCWACWB22
Vladimir Nikolic, Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu, René L. Warren, Inanç Birol:
btllib: A C++ library with Python interface for efficient genomic sequence processing. J. Open Source Softw. 7(79): 4720 (2022)
2021
[j18]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/WarrenB21
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/WarrenB21
René L. Warren, Inanç Birol:
HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset. Bioinform. 36(21): 5271-5273 (2021)
[j17]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bmcbi/CoombeLLWNWB21
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bmcbi/CoombeLLWNWB21
Lauren Coombe, Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolic, René L. Warren, Inanç Birol:
LongStitch: high-quality genome assembly correction and scaffolding using long reads. BMC Bioinform. 22(3): 534 (2021)
[j16]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/tcbb/ChenCZWB21
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/tcbb/ChenCZWB21
Eric Chen, Justin Chu, Jessica Zhang, René L. Warren, Inanç Birol:
GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2802-2808 (2021)
[i1]
- view
  - electronic edition @ arxiv.org (open access)
  - references & citations
- export record
  dblp key:
  - journals/corr/abs-2105-10552
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/corr/abs-2105-10552
Eric Chen, Justin Chu, Jessica Zhang, René L. Warren, Inanç Birol:
GapPredict: A Language Model for Resolving Gaps in Draft Genome Assemblies. CoRR abs/2105.10552 (2021)
2020
[j15]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/CoombeNCBW20
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/CoombeNCBW20
Lauren Coombe, Vladimir Nikolic, Justin Chu, Inanç Birol, René L. Warren:
ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs. Bioinform. 36(12): 3885-3887 (2020)

2010 – 2019

see FAQ

What is the meaning of the colors in the publication lists?

2019
[j14]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/WarrenCMZJIJBBB19
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/WarrenCMZJIJBBB19
René L. Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J. M. Jones, Jean Bousquet, Jörg Bohlmann, Inanç Birol:
ntEdit: scalable genome sequence polishing. Bioinform. 35(21): 4430-4432 (2019)
2018
[j13]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/YeoCWCB18
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/YeoCWCB18
Sarah Yeo, Lauren Coombe, René L. Warren, Justin Chu, Inanç Birol:
ARCS: scaffolding genome drafts with linked reads. Bioinform. 34(5): 725-731 (2018)
[j12]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/KhanMVWCB18
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/KhanMVWCB18
Hamza Khan, Hamid Mohamadi, Benjamin P. Vandervalk, René L. Warren, Justin Chu, Inanç Birol:
ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data. Bioinform. 34(10): 1697-1704 (2018)
[j11]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bmcbi/CoombeZVCJBW18
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bmcbi/CoombeZVCJBW18
Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanç Birol, René L. Warren:
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. BMC Bioinform. 19(1): 234:1-234:10 (2018)
[j10]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bmcbi/JackmanCCWVYXMB18
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bmcbi/JackmanCCWVYXMB18
Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol:
Tigmint: correcting assembly errors using linked reads from large molecules. BMC Bioinform. 19(1): 393:1-393:10 (2018)
[j9]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/jossw/Warren18
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/jossw/Warren18
René L. Warren:
Visualizing genome synteny with xmatchview. J. Open Source Softw. 3(21): 497 (2018)
2017
[j8]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/ChuMWYB17
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/ChuMWYB17
Justin Chu, Hamid Mohamadi, René L. Warren, Chen Yang, Inanç Birol:
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art. Bioinform. 33(8): 1261-1270 (2017)
[j7]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/KucukCVHWB17
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/KucukCVHWB17
Erdi Kucuk, Justin Chu, Benjamin P. Vandervalk, S. Austin Hammond, René L. Warren, Inanç Birol:
Kollector: transcript-informed, targeted de novo assembly of gene loci. Bioinform. 33(12): 1782-1788 (2017)
[j6]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/KucukCVHWB17a
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/KucukCVHWB17a
Erdi Kucuk, Justin Chu, Benjamin P. Vandervalk, S. Austin Hammond, René L. Warren, Inanç Birol:
Kollector: transcript-informed, targeted de novo assembly of gene loci. Bioinform. 33(17): 2789 (2017)
2016
[j5]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/jossw/Warren16
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/jossw/Warren16
René L. Warren:
RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences. J. Open Source Softw. 1(7): 116 (2016)
2015
[j4]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bmcbi/PaulinoWVRJB15
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bmcbi/PaulinoWVRJB15
Daniel Paulino, René L. Warren, Benjamin P. Vandervalk, Anthony Raymond, Shaun D. Jackman, Inanç Birol:
Sealer: a scalable gap-closing application for finishing draft genomes. BMC Bioinform. 16: 230:1-230:8 (2015)
2014
[c3]
- view
  authority control:
- export record
  dblp key:
  - conf/bibm/BirolMRRCVJW14
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/bibm/BirolMRRCVJW14
Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren:
Spaced seed data structures. BIBM 2014: 15-22
[c2]
- view
  authority control:
- export record
  dblp key:
  - conf/bibm/VandervalkJRMYACWB14
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/bibm/VandervalkJRMYACWB14
Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol:
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. BIBM 2014: 51-58
2011
[c1]
- view
  authority control:
- export record
  dblp key:
  - conf/pdp/DAgostinoMWGMC11
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/pdp/DAgostinoMWGMC11
Daniele D'Agostino, Ivan Merelli, René L. Warren, Alessandro Guffanti, Luciano Milanesi, Andrea Clematis:
Parallelization of the SSAKE Genomics Application. PDP 2011: 326-330

2000 – 2009

see FAQ

What is the meaning of the colors in the publication lists?

2009
[j3]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/WarrenNH09
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/WarrenNH09
René L. Warren, Brad H. Nelson, Robert A. Holt:
Profiling model T-cell metagenomes with short reads. Bioinform. 25(4): 458-464 (2009)
2007
[j2]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/WarrenSJH07
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/WarrenSJH07
René L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt:
Assembling millions of short DNA sequences using SSAKE. Bioinform. 23(4): 500-501 (2007)
[j1]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/BainbridgeWHBRJ07
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/BainbridgeWHBRJ07
Matthew N. Bainbridge, René L. Warren, An He, Mikhail Bilenky, Gordon Robertson, Steven J. M. Jones:
THOR: targeted high-throughput ortholog reconstructor. Bioinform. 23(19): 2622-2624 (2007)

Coauthor Index

see FAQ

manage site settings

To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.