default search action
Fiona S. L. Brinkman
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
- [j36]Brian P. Alcock
, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 51(D1): 690-699 (2023) - 2021
- [j35]Wing Yin Venus Lau
PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations. Nucleic Acids Res. 49(Database-Issue): D803-D808 (2021) - 2020
- [j34]Michael A. Peabody, Wing Yin Venus Lau
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. Bioinform. 36(10): 3043-3048 (2020) - [j33]Brian P. Alcock
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Res. 48(Database-Issue): D517-D525 (2020)
2010 – 2019
- 2019
- [j32]Claire Bertelli
Microbial genomic island discovery, visualization and analysis. Briefings Bioinform. 20(5): 1685-1698 (2019) - 2018
- [j31]Claire Bertelli
Improved genomic island predictions with IslandPath-DIMOB. Bioinform. 34(13): 2161-2167 (2018) - 2017
- [j30]Baofeng Jia, Amogelang R. Raphenya, Brian P. Alcock
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database. Nucleic Acids Res. 45(Database-Issue): D566-D573 (2017) - [j29]Claire Bertelli
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. Nucleic Acids Res. 45(Webserver-Issue): W30-W35 (2017) - [c5]Dalia A. Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao:
FoodOn: A Semantic Ontology Approach for Mapping Foodborne Disease Metadata. ICBO 2017 - [c4]Damion M. Dooley, Emma J. Griffiths, Gurinder Gosal, Fiona S. L. Brinkman, William W. L. Hsiao:
The Genomic Epidemiology Ontology and GEEM Ontology Reusability Platform. JOWO 2017 - 2016
- [j28]Geoffrey L. Winsor
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database. Nucleic Acids Res. 44(Database-Issue): 646-653 (2016) - [j27]Michael A. Peabody
PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures. Nucleic Acids Res. 44(Database-Issue): 663-668 (2016) - [c3]Damion M. Dooley, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao:
An OBI Ontology Datum Proof Sheet. ICBO/BioCreative 2016 - [c2]Emma J. Griffiths, Damion M. Dooley, Pier Luigi Buttigieg, Robert Hoehndorf, Fiona S. L. Brinkman, William W. L. Hsiao:
FoodON: A Global Farm-to-Fork Food Ontology. ICBO/BioCreative 2016 - 2015
- [j26]Silvia Frias, Kenneth Bryan
CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization. Database J. Biol. Databases Curation 2015 (2015) - [j25]Matthew R. Laird
GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications. Bioinform. 31(20): 3348-3349 (2015) - [j24]Michael A. Peabody, Thea Van Rossum
Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities. BMC Bioinform. 16: 362:1-362:19 (2015) - [j23]Bhavjinder K. Dhillon, Matthew R. Laird
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis. Nucleic Acids Res. 43(Webserver-Issue): W104-W108 (2015) - 2013
- [j22]Matthew D. Whiteside, Geoffrey L. Winsor
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis. Nucleic Acids Res. 41(Database-Issue): 366-376 (2013) - [j21]Karin Breuer, Amir K. Foroushani
InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucleic Acids Res. 41(Database-Issue): 1228-1233 (2013) - [j20]Bhavjinder K. Dhillon, Terry A. Chiu, Matthew R. Laird
IslandViewer update: improved genomic island discovery and visualization. Nucleic Acids Res. 41(Webserver-Issue): 129-132 (2013) - 2012
- [j19]Morgan G. I. Langille
MicrobeDB: a locally maintainable database of microbial genomic sequences. Bioinform. 28(14): 1947-1948 (2012) - 2011
- [j18]Jeong Eun Min, Matthew D. Whiteside, Fiona S. L. Brinkman
A statistical approach to high-throughput screening of predicted orthologs. Comput. Stat. Data Anal. 55(1): 935-943 (2011) - [j17]Nancy Y. Yu
PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea. Nucleic Acids Res. 39(Database-Issue): 241-244 (2011) - [j16]Geoffrey L. Winsor
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Res. 39(Database-Issue): 596-600 (2011) - 2010
- [j15]Nancy Y. Yu
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinform. 26(13): 1608-1615 (2010) - [j14]David J. Lynn
Curating the innate immunity interactome. BMC Syst. Biol. 4: 117 (2010)
2000 – 2009
- 2009
- [j13]Morgan G. I. Langille
IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinform. 25(5): 664-665 (2009) - [j12]Geoffrey L. Winsor
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Nucleic Acids Res. 37(Database-Issue): 483-488 (2009) - 2008
- [j11]Geoffrey L. Winsor
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses. Bioinform. 24(23): 2803-2804 (2008) - [j10]Morgan G. I. Langille
Evaluation of genomic island predictors using a comparative genomics approach. BMC Bioinform. 9 (2008) - 2006
- [j9]Debra L. Fulton, Yvonne Y. Li, Matthew R. Laird
Improving the specificity of high-throughput ortholog prediction. BMC Bioinform. 7: 270 (2006) - 2005
- [j8]Jennifer L. Gardy, Matthew R. Laird
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinform. 21(5): 617-623 (2005) - [j7]Sébastien Rey, Michael Acab, Jennifer L. Gardy, Matthew R. Laird
PSORTdb: a protein subcellular localization database for bacteria. Nucleic Acids Res. 33(Database-Issue): 164-168 (2005) - [j6]Geoffrey L. Winsor
Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. Nucleic Acids Res. 33(Database-Issue): 338-343 (2005) - 2004
- [j5]Karsten Hokamp
ArrayPipe: a flexible processing pipeline for microarray data. Nucleic Acids Res. 32(Web-Server-Issue): 457-459 (2004) - [j4]Fiona M. Roche
ProbeLynx: a tool for updating the association of microarray probes to genes. Nucleic Acids Res. 32(Web-Server-Issue): 471-474 (2004) - 2003
- [j3]William W. L. Hsiao, Ivan Wan, Steven J. M. Jones
IslandPath: aiding detection of genomic islands in prokaryotes. Bioinform. 19(3): 418-420 (2003) - [j2]Jennifer L. Gardy, Cory Spencer, Ke Wang, Martin Ester, Gábor E. Tusnády, István Simon
PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria. Nucleic Acids Res. 31(13): 3613-3617 (2003) - [c1]Rong She, Fei Chen, Ke Wang, Martin Ester, Jennifer L. Gardy, Fiona S. L. Brinkman:
Frequent-subsequence-based prediction of outer membrane proteins. KDD 2003: 436-445 - 2001
- [j1]Fiona S. L. Brinkman
PhyloBLAST: facilitating phylogenetic analysis of BLAST results. Bioinform. 17(4): 385-387 (2001)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 21:23 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by: