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Filippo Castiglione
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- affiliation: National Research Council of Italy, Rome, Italy
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2020 – today
- 2024
- [j39]Raghvendra Mall
, Ankita Singh, Chirag N. Patel
VISH-Pred: an ensemble of fine-tuned ESM models for protein toxicity prediction. Briefings Bioinform. 25(4) (2024) - [j38]Filippo Castiglione, Peteris Daugulis, Emiliano Mancini, Rik Oldenkamp, Constance Schultsz, Vija Vagale:
Predicting Antimicrobial Resistance Trends Combining Standard Linear Algebra with Machine Learning Algorithms. Balt. J. Mod. Comput. 12(1) (2024) - [j37]Reinhard C. Laubenbacher, Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luis L. Fonseca, James A. Glazier, Tomás Helikar, Marti Jett-Tilton, Denise Kirschner, Paul Macklin, Borna Mehrad, Beth Moore, Virginia Pasour, Ilya Shmulevich, Amber Smith, Isabel Voigt
Toward mechanistic medical digital twins: some use cases in immunology. Frontiers Digit. Health 6 (2024) - [i1]Étienne Goffinet, Raghvendra Mall
MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor. CoRR abs/2401.08619 (2024) - 2023
- [j36]Maria Concetta Palumbo
A computational model of the effects of macronutrients absorption and physical exercise on hormonal regulation and metabolic homeostasis. Comput. Biol. Medicine 163: 107158 (2023) - [j35]Paola Stolfi, Davide Vergni, Filippo Castiglione:
An agent-based multi-level model to study the spread of gonorrhea in different and interacting risk groups. Frontiers Appl. Math. Stat. 9 (2023) - [j34]Filippo Castiglione
Explainable Drug Repurposing Approach From Biased Random Walks. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1009-1019 (2023) - [c21]Enrico Mastrostefano, Alessandro Ravoni
Harnessing computational models to uncover the role of the immune system in tuberculosis treatment. BIBM 2023: 3725-3732 - 2022
- [j33]Peteris Daugulis, Vija Vagale, Emiliano Mancini
A PCA-based Data Prediction Method. Balt. J. Mod. Comput. 10(1) (2022) - [c20]Paola Stolfi, Davide Vergni, Rik Oldenkamp
An agent-based multi-level model to study the spread of antimicrobial-resistant gonorrhoea. BIBM 2022: 803-808 - 2021
- [j32]Haiying Wang, Estelle Pujos-Guillot
Deep learning in systems medicine. Briefings Bioinform. 22(2): 1543-1559 (2021) - [j31]Paola Stolfi
Emulating complex simulations by machine learning methods. BMC Bioinform. 22-S(14): 483 (2021) - [c19]Enrico Mastrostefano, Paola Stolfi, Filippo Castiglione:
A data-driven model for the generation of Virtual Cohorts. BIBM 2021: 3291-3298 - [c18]Paola Stolfi, Filippo Castiglione:
A functional data analysis approach to assess the prognostic value of SARS-CoV-2 infections surrogate data. BIBM 2021: 3308-3314 - 2020
- [j30]Paola Stolfi
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices. BMC Bioinform. 21-S(17): 508 (2020) - [c17]Paola Stolfi, Filippo Castiglione:
Emulation of dynamic multi-output simulator of risk of type-2 diabetes. BIBM 2020: 1289-1294
2010 – 2019
- 2019
- [j29]Massimiliano Zanin, Ivan Chorbev, Blaz Stres
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine. Briefings Bioinform. 20(3): 1057-1062 (2019) - [j28]Alva Presbitero
Game of neutrophils: modeling the balance between apoptosis and necrosis. BMC Bioinform. 20-S(6): 475 (2019) - [j27]Vinca Prana, Paolo Tieri
Modeling the Effect of High Calorie Diet on the Interplay between Adipose Tissue, Inflammation, and Diabetes. Comput. Math. Methods Medicine 2019: 7525834:1-7525834:8 (2019) - [c16]Alessandro Celestini
Critical nodes reveal peculiar features of human essential genes and protein interactome. BIBM 2019: 2121-2128 - [c15]Paola Stolfi, Ilaria Valentini, Maria Concetta Palumbo
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices. BIBM 2019: 2214-2221 - [r3]Paolo Tieri
Network Inference and Reconstruction in Bioinformatics. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 805-813 - [r2]Filippo Castiglione
Quantitative Modelling Approaches. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 874-883 - 2018
- [j26]Maria Concetta Palumbo
Personalizing physical exercise in a computational model of fuel homeostasis. PLoS Comput. Biol. 14(4) (2018) - [c14]Leandro Martins de Freitas
A mathematical model of Chagas disease infection predicts inhibition of the immune system. BIBM 2018: 1374-1379 - [c13]Alva Presbitero
Evolutionary Game Theory Can Explain the Choice Between Apoptotic and Necrotic Pathways in Neutrophils. BIBM 2018: 1401-1405 - [c12]Henrique Assis Lopes de Ribeiro, Tatiani Uceli Maioli, Leandro Martins de Freitas
A mathematical model of murine macrophage infected with Leishmania sp. BIBM 2018: 1425-1430 - 2017
- [j25]Alice Madonia, Cristiano Melchiorri, Simone Bonamano, Marco Marcelli
Computational modeling of immune system of the fish for a more effective vaccination in aquaculture. Bioinform. 33(19): 3065-3071 (2017) - [c11]Filippo Castiglione
In-silico analysis of the "memory anti-Naïve" effect in anti-viral cross-reactive responses. BIBM 2017: 1433-1437 - [c10]Marco Pedicini
Computing Hierarchical Transition Graphs of Asynchronous Genetic Regulatory Networks. WIVACE 2017: 88-103 - 2016
- [j24]Antonio Cappuccio
Multiscale modelling in immunology: a review. Briefings Bioinform. 17(3): 408-418 (2016) - [j23]Filippo Castiglione
Statistical ensemble of gene regulatory networks of macrophage differentiation. BMC Bioinform. 17(S-19): 119-128 (2016) - 2015
- [j22]Eugenia Galeota
The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells. BMC Syst. Biol. 9(S-3): S3 (2015) - 2014
- [c9]Matteo Rucco, Filippo Castiglione
Characterisation of the Idiotypic Immune Network Through Persistent Entropy. ECCS 2014: 117-128 - [c8]Paolo Tieri, Vinca Prana, Teresa Colombo, Daniele Santoni
Multi-scale Simulation of T Helper Lymphocyte Differentiation. BSB 2014: 123-134 - 2013
- [j21]Joachim von Eichborn, Anna Lena Woelke, Filippo Castiglione
VaccImm: simulating peptide vaccination in cancer therapy. BMC Bioinform. 14: 127 (2013) - [c7]Filippo Castiglione, Francesco Pappalardo:
Computational Biology Modeling across Different Scales. SIMULTECH 2013: 617-625 - 2012
- [j20]Benjamin Ribba, Hanane El Garch, Sylvie Brunet, Emmanuel Grenier, Filippo Castiglione
Time-Course Analysis of Main Markers of Primary Infection in Cats with the Feline Immunodeficiency Virus. Comput. Math. Methods Medicine 2012: 342602:1-342602:9 (2012) - [j19]Filippo Castiglione
How the Interval between Prime and Boost Injection Affects the Immune Response in a Computational Model of the Immune System. Comput. Math. Methods Medicine 2012: 842329:1-842329:9 (2012) - 2011
- [j18]Nicolas Rapin
Immune system simulation online. Bioinform. 27(14): 2013-2014 (2011) - 2010
- [j17]Marco Pedicini
Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation. PLoS Comput. Biol. 6(12) (2010)
2000 – 2009
- 2009
- [j16]Francesco Pappalardo
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings Bioinform. 10(3): 330-340 (2009) - [j15]Valentina Baldazzi
Modeling lymphocyte homing and encounters in lymph nodes. BMC Bioinform. 10: 387 (2009) - [c6]Filippo Castiglione
Toward Multi-organs Simulations of Immune-Pathogen Interactions. ISDA 2009: 330-334 - [r1]Filippo Castiglione:
Agent Based Modeling and Simulation, Introduction to. Encyclopedia of Complexity and Systems Science 2009: 197-200 - 2008
- [j14]Daniele Santoni
Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions. Bioinform. 24(11): 1374-1380 (2008) - [j13]Massimo Bernaschi, Filippo Castiglione
Comments on "Optimization and parallelization strategies for Monte Carlo simulation of HIV infection" by D. Hecquet, H.J. Ruskin and M. Crane Computers in Biology and Medicine, volume 37, 691, 2007. Comput. Biol. Medicine 38(2): 281 (2008) - [c5]Paola Paci, Filippo Castiglione
A Discrete/Continuous Model of Anti-HIV Response and Therapy. UKSim 2008: 481-486 - 2007
- [j12]Filippo Castiglione
Simulating Epstein-Barr virus infection with C-ImmSim. Bioinform. 23(11): 1371-1377 (2007) - [j11]Filippo Castiglione
Optimization of HAART with genetic algorithms and agent-based models of HIV infection. Bioinform. 23(24): 3350-3355 (2007) - [j10]Massimo Bernaschi, Filippo Castiglione
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics. BMC Bioinform. 8(S-1) (2007) - 2006
- [j9]Filippo Castiglione:
Agent based modeling. Scholarpedia 1(10): 1562 (2006) - 2005
- [j8]Francesco Pappalardo
Modeling and simulation of cancer immunoprevention vaccine. Bioinform. 21(12): 2891-2897 (2005) - [j7]Federico Massaioli, Filippo Castiglione
OpenMP parallelization of agent-based models. Parallel Comput. 31(10-12): 1066-1081 (2005) - [j6]Filippo Castiglione
Simulating the G-protein cAMP pathway with a two-compartment reactive lattice gas. Theory Biosci. 123(4): 413-429 (2005) - 2004
- [c4]Filippo Castiglione, Federico Toschi
Computational modeling of the immune response to tumor antigens: implications for vaccination. CDC 2004: 569-574 - [c3]Filippo Castiglione, Benedetto Piccoli:
Optimal control in a model of dendritic cell transfection cancer immunotherapy. CDC 2004: 585-590 - 2001
- [b1]Filippo Castiglione:
Microsimulation of complex system dynamics: automata models in biology and finance. University of Cologne, Germany, 2001 - [j5]Filippo Castiglione:
Forecasting Price increments using an Artificial Neural Network. Adv. Complex Syst. 4(1): 45-56 (2001) - [j4]Massimo Bernaschi, Filippo Castiglione
Design and implementation of an immune system simulator. Comput. Biol. Medicine 31(5): 303-331 (2001) - [j3]Filippo Castiglione, Santo Motta, Giuseppe Nicosia:
Pattern recognition by primary and secondary response of an Artificial Immune System. Theory Biosci. 120(2): 93-106 (2001) - 2000
- [j2]Filippo Castiglione
Estimating the Keratoconus Index from Ultrasound Images of the Human Cornea. IEEE Trans. Medical Imaging 19(12): 1268-1272 (2000)
1990 – 1999
- 1999
- [j1]Massimo Bernaschi, Filippo Castiglione
A high performance simulator of the immune response. Future Gener. Comput. Syst. 15(3): 333-342 (1999) - 1998
- [c2]Massimo Bernaschi, Filippo Castiglione, Sauro Succi:
A Parallel Simulator of the Immune Response. HPCN Europe 1998: 163-172 - 1997
- [c1]Massimo Bernaschi, Filippo Castiglione, Sauro Succi:
A parallel algorithm for the simulation of the Immune Response. WAE 1997: 198-208
Coauthor Index
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last updated on 2024-11-14 21:01 CET by the dblp team
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