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Jeroen F. J. Laros

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2020 – today

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2023
[j9]
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Jonathan K. Vis, Mark A. Santcroos, Walter A. Kosters, Jeroen F. J. Laros:
A Boolean algebra for genetic variants. Bioinform. 39(1) (2023)
2021
[j8]
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Mihai Lefter, Jonathan K. Vis, Martijn Vermaat, Johan T. den Dunnen, Peter E. M. Taschner, Jeroen F. J. Laros:
Mutalyzer 2: next generation HGVS nomenclature checker. Bioinform. 37(18): 2811-2817 (2021)
[i3]
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Jonathan K. Vis, Mark A. Santcroos, Walter A. Kosters, Jeroen F. J. Laros:
A Boolean Algebra for Genetic Variants. CoRR abs/2112.14494 (2021)

2010 – 2019

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2018
[j7]
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Jeroen F. J. Laros:
General binary file parser. J. Open Source Softw. 3(26): 766 (2018)
2017
[c7]
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Peter van't Hof, Szymon M. Kielbasa, Wibowo Arindrarto, Jeroen F. J. Laros, Sander Bollen, Hailiang Mei:
BIOPET: towards Scalable, Maintainable, User-friendly, Robust and Flexible NGS data analysis pipelines. CCGrid 2017: 823-829
2015
[j6]
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Jonathan K. Vis, Martijn Vermaat, Peter E. M. Taschner, Joost N. Kok, Jeroen F. J. Laros:
An efficient algorithm for the extraction of HGVS variant descriptions from sequences. Bioinform. 31(23): 3751-3757 (2015)
[c6]
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Eelke van der Horst, Rajaram Kaliyaperumal, Zuotian Tatum, Mark Thompson, Erik A. Schultes, Eleni Mina, Ivo Fokkema, Johan T. den Dunnen, Marco Roos, Jeroen F. J. Laros, Barend Mons, Kristina M. Hettne, Peter A. C. 't Hoen:
Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites. SWAT4LS 2015: 2-12
2014
[j5]
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Seyed Yahya Anvar, Kristiaan J. van der Gaag, Jaap W. F. van der Heijden, Marcel H. A. M. Veltrop, Rolf H. A. M. Vossen, Rick H. de Leeuw, Cor Breukel, Henk P. J. Buermans, J. Sjef Verbeek, Peter de Knijff, Johan T. den Dunnen, Jeroen F. J. Laros:
TSSV: a tool for characterization of complex allelic variants in pure and mixed genomes. Bioinform. 30(12): 1651-1659 (2014)
[j4]
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Zuotian Tatum, Marco Roos, Andrew P. Gibson, Peter E. M. Taschner, Mark Thompson, Erik A. Schultes, Jeroen F. J. Laros:
Preserving sequence annotations across reference sequences. J. Biomed. Semant. 5(S-1): S6 (2014)
[j3]
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The Fantom Consortium, RIKEN PMII, RIKEN CLST (DGT), Alistair R. R. Forrest, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier, Nicolas Bertin, Mette Jørgensen, Emmanuel Dimont, Erik Arner, Christian Schmidl, Ulf Schaefer, Yulia A. Medvedeva, Charles Plessy, Morana Vitezic, Jessica Severin, Colin A. M. Semple, Yuri Ishizu, Robert S. Young, Margherita Francescatto, Intikhab Alam, Davide Albanese, Gabriel M. Altschuler, Takahiro Arakawa, John A. C. Archer, Peter Arner, Magda Babina, Sarah Rennie, Piotr J. Balwierz, Anthony G. Beckhouse, Swati Pradhan-Bhatt, Judith A. Blake, Antje Blumenthal, Beatrice Bodega, Alessandro Bonetti, James Briggs, Frank Brombacher, A. Maxwell Burroughs, Andrea Califano, Carlo V. Cannistraci, Daniel Carbajo, Yun Chen, Marco Chierici, Yari Ciani, Hans Clevers, Emiliano Dalla, Carrie A. Davis, Michael Detmar, Alexander D. Diehl, Taeko Dohi, Finn Drabløs, Albert S. B. Edge, Matthias Edinger, Karl Ekwall, Mitsuhiro Endoh, Hideki Enomoto, Michela Fagiolini, Lynsey Fairbairn, Hai Fang, Mary C. Farach-Carson, Geoffrey J. Faulkner, Alexander V. Favorov, Malcolm E. Fisher, Martin C. Frith, Rie Fujita, Shiro Fukuda, Cesare Furlanello, Masaaki Furuno, Jun-ichi Furusawa, Teunis B. Geijtenbeek, Andrew P. Gibson, Thomas R. Gingeras, Daniel Goldowitz, Julian Gough, Sven Guhl, Reto Guler, Stefano Gustincich, Thomas J. Ha, Masahide Hamaguchi, Mitsuko Hara, Matthias Harbers, Jayson Harshbarger, Akira Hasegawa, Yuki Hasegawa, Takehiro Hashimoto, Meenhard Herlyn, Kelly J. Hitchens, Shannan J. Ho Sui, Oliver M. Hofmann, Ilka Hoof, Fumi Hori, Lukasz Huminiecki, Kei Iida, Tomokatsu Ikawa, Boris R. Jankovic, Hui Jia, Anagha Joshi, Giuseppe Jurman, Bogumil Kaczkowski, Chieko Kai, Kaoru Kaida, Ai Kaiho, Kazuhiro Kajiyama, Mutsumi Kanamori-Katayama, Artem S. Kasianov, Takeya Kasukawa, Shintaro Katayama, Sachi Kato, Shuji Kawaguchi, Hiroshi Kawamoto, Yuki I. Kawamura, Tsugumi Kawashima, Judith S. Kempfle, Tony J. Kenna, Juha Kere, Levon M. Khachigian, Toshio Kitamura, S. Peter Klinken, Alan J. Knox, Miki Kojima, Soichi Kojima, Naoto Kondo, Haruhiko Koseki, Shigeo Koyasu, Sarah Krampitz, Atsutaka Kubosaki, Andrew T. Kwon, Jeroen F. J. Laros, Weonju Lee, Andreas Lennartsson, Kang Li, Berit Lilje, Leonard Lipovich, Alan Mackay-Sim, Ri-ichiroh Manabe, Jessica Cara Mar, Benoit Marchand, Anthony Mathelier, Niklas Mejhert, Alison M. Meynert, Yosuke Mizuno, David A. de Lima Morais, Hiromasa Morikawa, Mitsuru Morimoto, Kazuyo Moro, Efthymios Motakis, Hozumi Motohashi, Christine Mummery, Mitsuyoshi Murata, Sayaka Nagao-Sato, Yutaka Nakachi, Fumio Nakahara, Toshiyuki Nakamura, Yukio Nakamura, Kenichi Nakazato, Erik van Nimwegen, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Tadasuke Nozaki, Soichi Ogishima, Naganari Ohkura, Hiroko Ohmiya, Hiroshi Ohno, Mitsuhiro Ohshima, Mariko Okada-Hatakeyama, Yasushi Okazaki, Valerio Orlando, Dmitry A. Ovchinnikov, Arnab Pain, Robert Passier, Margaret Patrikakis, Helena Persson, Silvano Piazza, James G. D. Prendergast, Owen J. L. Rackham, Jordan A. Ramilowski, Mamoon Rashid, Timothy Ravasi, Patrizia Rizzu, Marco Roncador, Sugata Roy, Morten B. Rye, Eri Saijyo, Antti Sajantila, Akiko Saka, Shimon Sakaguchi, Mizuho Sakai, Hiroki Sato, Hironori Sato, Suzana Savvi, Alka Saxena, Claudio Schneider, Erik A. Schultes, Gundula G. Schulze-Tanzil, Anita Schwegmann, Thierry Sengstag, Guojun Sheng, Hisashi Shimoji, Yishai Shimoni, Jay W. Shin, Christophe Simon, Daisuke Sugiyama, Takaaki Sugiyama, Masanori Suzuki, Naoko Suzuki, Rolf K. Swoboda, Peter A. C. 't Hoen, Michihira Tagami, Naoko Takahashi, Jun Takai, Hiroshi Tanaka, Hideki Tatsukawa, Zuotian Tatum, Mark Thompson, Hiroo Toyoda, Tetsuro Toyoda, Eivind Valen, Marc van de Wetering, Linda M. van den Berg, Roberto Verardo, Dipti Vijayan, Ilya E. Vorontsov, Wyeth W. Wasserman, Shoko Watanabe, Christine A. Wells, Louise N. Winteringham, Ernst Wolvetang, Emily J. Wood, Yoko Yamaguchi, Masayuki Yamamoto, Misako Yoneda, Yohei Yonekura, Shigehiro Yoshida, Susan E. Zabierowski, Peter G. Zhang, Xiaobei Zhao, Silvia Zucchelli, Kim M. Summers, Harukazu Suzuki, Carsten O. Daub, Jun Kawai, Peter Heutink, Winston Hide, Tom C. Freeman, Boris Lenhard, Vladimir B. Bajic, Martin S. Taylor, Vsevolod J. Makeev, Albin Sandelin, David A. Hume, Piero Carninci, Yoshihide Hayashizaki:
A promoter-level mammalian expression atlas. Nat. 507(7493): 462-470 (2014)
2011
[j2]
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Jeroen F. J. Laros, André Blavier, Johan T. den Dunnen, Peter E. M. Taschner:
A formalized description of the standard human variant nomenclature in Extended Backus-Naur Form. BMC Bioinform. 12(S-4): S5 (2011)
[c5]
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Zuotian Tatum, Johan T. den Dunnen, Jeroen F. J. Laros:
CLI-mate: an interface generator for command line programs. SWAT4LS 2011: 114-115

2000 – 2009

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2008
[j1]
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Hendrik Jan Hoogeboom, Walter A. Kosters, Jeroen F. J. Laros:
Selection of DNA Markers. IEEE Trans. Syst. Man Cybern. Part C 38(1): 26-32 (2008)
[c4]
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Tim K. Cocx, Walter A. Kosters, Jeroen F. J. Laros:
Temporal Extrapolation within a Static Clustering. ISMIS 2008: 189-195
[c3]
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Tim K. Cocx, Walter A. Kosters, Jeroen F. J. Laros:
An Early Warning System for the Prediction of Criminal Careers. MICAI 2008: 77-89
[i2]
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Michael Hansen, Jeroen F. J. Laros:
Desynched channels on IRCnet. CoRR abs/0811.3140 (2008)
2007
[c2]
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Walter A. Kosters, Jeroen F. J. Laros:
Metrics for Mining Multisets. SGAI Conf. 2007: 293-303
2006
[c1]
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Jeroen S. de Bruin, Tim K. Cocx, Walter A. Kosters, Jeroen F. J. Laros, Joost N. Kok:
Data Mining Approaches to Criminal Career Analysis. ICDM 2006: 171-177
[i1]
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  - journals/corr/abs-cs-0605076
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Jeroen F. J. Laros:
Numeration-automatic sequences. CoRR abs/cs/0605076 (2006)

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