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BIBM 2009: Washington, DC, USA
- 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009, Washington, DC, USA, November 1-4, 2009, Proceedings. IEEE Computer Society 2009, ISBN 978-0-7695-3885-3
Genomics and Molecular Structure, Function, and Evolution
- Guan Ning Lin, Zheng Wang, Dong Xu, Jianlin Cheng
:
Sequence-Based Prediction of Protein Folding Rates Using Contacts, Secondary Structures and Support Vector Machines. 3-8 - Jeffrey L. Ram, Yi Lu:
Bioinformatics Pipeline for Identification of Binding Motifs of Flexible Protein Tethers. 9-14 - Hengyun Lu, Genke Yang, Lam Fat Yeung
Extremal Optimization for the Protein Structure Alignment. 15-19 - Wei-Yao Chou, Shu-Chuan Lin, Rong-Yuan Huang, Ting-Ying Jiang, Chien-Jung Chen, Chia-Mao Wu, Chuan Yi Tang, Margaret Dah-Tsyr Chang, Wei-I Chou, Hao-Teng Chang:
Biological Feature Incorporated Alignment for Cross Species Analysis on Carbohydrate Binding Modules. 20-25 - Majid Masso
Accurate Prediction of Stability Changes in Bacteriophage T4 Lysozyme upon Single Amino Acid Replacements. 26-30 - Tak Wah Lam
High Throughput Short Read Alignment via Bi-directional BWT. 31-36 - Eddie Y. T. Ma, Stefan C. Kremer:
Neural Grammar Networks in QSAR Chemistry. 37-42 - Bo Li, Feng Luo:
Predicting Yeast Synthetic Lethal Genetic Interactions Using Protein Domains. 43-47 - Fadi Towfic, M. Heather West Greenlee, Vasant G. Honavar
Detection of Gene Orthology Based on Protein-Protein Interaction Networks. 48-53 - Jeffrey Martin, Wenhan Zhu, Nicholas H. Bergman, Mark Borodovsky:
Assessment of Gene Annotation Accuracy by Inferring Transcripts from RNA-Seq. 54-59 - Matthew C. Schmidt, Nagiza F. Samatova:
An Algorithm for the Discovery of Phenotype Related Metabolic Pathways. 60-65 - Bin Liu, Lei Lin, Xiaolong Wang, Xuan Wang, Yi Shen:
Protein Long Disordered Region Prediction Based on Profile-Level Disorder Propensities and Position-Specific Scoring Matrixes. 66-69 - Hyrum Carroll, Mark J. Clement, Quinn Snell, David A. McClellan:
ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties. 70-73 - Min Xu, Shi-Hua Zhang, Frank Alber:
3D Rotation Invariant Features for the Characterization of Molecular Density Maps. 74-78 - Pavel P. Kuksa
Fast Motif Selection for Biological Sequences. 79-82 - Mohammadreza Ghodsi, Mihai Pop
Inexact Local Alignment Search over Suffix Arrays. 83-87 - Mehmet Tan
Derivation of Transcriptional Regulatory Relationships by Partial Least Squares Regression. 88-91 - Maria Chaley
Statistical Methods for Detecting Latent Periodicity in Biological Sequences: Solving a Problem of Small-Size Samples. 92-96
Computational Systems Biology
- Timur Fayruzov, Martine De Cock
Modeling Protein Interaction Networks with Answer Set Programming. 99-104 - Young-Rae Cho, Aidong Zhang:
Restructuring Protein Interaction Networks to Reveal Structural Hubs and Functional Organizations. 105-110 - Qian Liu, Yi-Ping Phoebe Chen
High Functional Coherence in k-Partite Protein Cliques of Protein Interaction Networks. 111-117 - Daniel Duanqing Wu, Xiaohua Hu, Tingting He:
Exploratory Analysis of Protein Translation Regulatory Networks Using Hierarchical Random Graphs. 118-123 - Zina M. Ibrahim
Qualitative Motif Detection in Gene Regulatory Networks. 124-129 - Brian E. Howard, Steffen Heber:
Towards Reliable Isoform Quantification Using RNA-Seq Data. 130-135 - Yoon Soo Pyon, Jing Li
Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis. 136-141 - Mutsumi Fukuzaki, Mio Seki, Hisashi Kashima, Jun Sese:
Side Effect Prediction Using Cooperative Pathways. 142-147 - Bing Han, Meeyoung Park, Xue-wen Chen:
DASSO-MB: Detection of Epistatic Interactions in Genome-Wide Association Studies Using Markov Blankets. 148-153 - Sejoon Lee, Eunjung Lee, Kwang Hyung Lee, Doheon Lee:
Disease Classification Based on the Activities of Interacting Molecular Modules with Condition-Responsive Correlation. 154-159 - Liang Lan
A Multi-task Feature Selection Filter for Microarray Classification. 160-165 - Akther Shermin, Mehmet A. Orgun
A 2-Stage Approach for Inferring Gene Regulatory Networks Using Dynamic Bayesian Networks. 166-169 - Junwan Liu, Zhoujun Li
Microarray Biclustering with Crowding Based MOACO. 170-173 - Pankaj Chopra, Jaewoo Kang, Jinseung Lee:
Using Gene Pair Combinations to Improve the Accuracy of the PAM Classifier. 174-177 - Yi Jia, Jun Huan:
The Analysis of Arabidopsis thaliana Circadian Network Based on Non-stationary DBNs Approach with Flexible Time Lag Choosing Mechanism. 178-181
Medical Informatics and Translational Bioinformatics
- Darío Rojas
Biofilm Image Segmentation Using Optimal Multi-level Thresholding. 185-190 - Yan Lu, Jingyu Yan, Yeung Yam:
Model-Based ECG Denoising Using Empirical Mode Decomposition. 191-196 - Sardar Ansari, Kayvan Najarian, Kevin Ward
Extraction of Respiratory Rate from Impedance Signal Measured on Arm: A Portable Respiratory Rate Measurement Device. 197-202 - Stan Pounds
Integrated Analysis of Pharmacokinetic, Clinical, and SNP Microarray Data Using Projection onto the Most Interesting Statistical Evidence with Adaptive Permutation Testing. 203-209 - Stuart J. Nelson, Kelly Zeng, John Kilbourne:
Building a Standards-Based and Collaborative E-Prescribing Tool. 210-215 - Jieun Jeong, Jake Y. Chen
RIC: Ranking with Interaction Chains and Its Application in Computational Clinical Proteomics Studies. 216-221 - Jeffrey Q. Jiang, Andreas W. M. Dress, Ming Chen:
Towards Identification of Human Disease Phenotype-Genotype Association via a Network-Module Based Method. 222-227 - Ala Qabaja, Mohammed Al-Shalalfa, Reda Alhajj, Jon G. Rokne:
Multiagent Approach for Identifying Cancer Biomarkers. 228-233 - Haixia Yan, Yiqin Wang, Zhaorong Liu, Rui Guo, Fufeng Li, Fengying Run, Yujian Hong:
Feature Extraction for Pulse Waveform in Traditional Chinese Medicine by Hemodynamic Analysis. 234-238 - Indranil Palit, Chandan K. Reddy
Differential Predictive Modeling for Racial Disparities in Breast Cancer. 239-245 - Sara Nasser, Aarati R. Ranade, Shravan Sridhart, Lisa Haney, Ronald L. Korn, Michael B. Gotway, Glen J. Weiss, Seungchan Kim:
Identifying MiRNA and Imaging Features Associated with Metastasis of Lung Cancer to the Brain. 246-251 - Alberto Cavallo
Evolution of the Probability of an MPM (Multiple Primary Malignancy) after a First Colon Tumor. 252-256 - Mohammad Zia Ur Rahman
An Efficient Noise Cancellation Technique to Remove Noise from the ECG Signal Using Normalized Signed Regressor LMS Algorithm. 257-260 - Gene Shuman:
Using Forearm Electromyograms to Classify Hand Gestures. 261-264 - Yujie Dong, Adam W. Hoover, Eric Muth:
A Device for Detecting and Counting Bites of Food Taken by a Person during Eating. 265-268 - Rafal Ladysz:
Nonlinear Dynamical and Entropic Complexity Measures as Indicators of Nonstationarities in Short-Term ECG Signals. 269-278 - Abhisek Kundu, Hatice Gulcin Ozer, Tara Borlawsky, Kristin C. Circle, Kun Huang, Philip R. O. Payne
Clinical Attribute Network for Chronic Lymphocytic Leukemia. 279-282 - Jiexun Li, Lifan Guo, Neal Handly:
Hospital Admission Prediction Using Pre-hospital Variables. 283-286 - Aniruddha J. Joshi, Sharat Chandran, Vaidyanathan K. Jayaraman, Bhaskar D. Kulkarni:
Hybrid SVM for Multiclass Arrhythmia Classification. 287-290 - Wenan Chen, Rebecca Smith, Simina Vasilache, Kayvan Najarian, Kevin Ward
Traumatic Pelvic Injury Outcome Prediction by Extracting Features from Relevant Medical Records and X-Ray Images. 291-294
Cross-Cutting Computational Methods and Bioinformatics Infrastructure
- Kevin Karsch, Qing He, Ye Duan:
A Fast, Semi-automatic Brain Structure Segmentation Algorithm for Magnetic Resonance Imaging. 297-302 - Dayu Lv, Bill Goodwine:
Pancreas Modeling from IVGTT Data Using a Deterministic Optimal Search Method. 303-308 - Kai-Cheng Hsu
GemAffinity: A Scoring Function for Predicting Binding Affinity and Virtual Screening. 309-314 - Amit Sabnis, Robert W. Harrison
A Novel Deterministic-Stochastic Crossover Method for Simulating Biochemical Networks. 315-320 - Alberto Casagrande
GAM: Genomic Assemblies Merger: A Graph Based Method to Integrate Different Assemblies. 321-326 - Mark J. O'Connor, Anja E. Hauser
Activated Germinal-Center B Cells Undergo Directed Migration. 327-331 - Guoqiang Yu, Bai Zhang, Jianfeng Xu, Ie-Ming Shih, Yue Joseph Wang:
Accurate Estimation of Genomic Deletions and Normal Cell Contamination by Bayesian Analysis of Mixtures. 332-337 - Minoo Aminian, Amina Shabbeer, Kristin P. Bennett:
Determination of Major Lineages of Mycobacterium tuberculosis Complex Using Mycobacterial Interspersed Repetitive Units. 338-343 - Xiaoshi Yin, Xiangji Huang
Towards a Better Ranking for Biomedical Information Retrieval Using Context. 344-349 - Min Su Lee, Sangyoon Oh, Byoung-Tak Zhang:
Ensemble Learning Based on Active Example Selection for Solving Imbalanced Data Problem in Biomedical Data. 350-355 - Xiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald H. Lushington
Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases. 356-361 - Yue W. Webster, Ranga Chandra Gudivada, Ernst R. Dow, Jacob Koehler, Mathew J. Palakal:
A Hybrid Method to Discover and Rank Cross-Disciplinary Associations. 362-365 - Jayasimha Reddy Katukuri, Ying Xie, Vijay V. Raghavan:
Biomedical Relationship Extraction from Literature Based on Bio-semantic Token Subsequences. 366-370 - Woo-Hyuk Jang, Suk Hoon Jung, Bo-ra Hyun, Dong-Soo Han:
A Protein-Protein Interaction Prediction Method Embracing Intra-protein Domain Cohesion Information. 371-374 - Xiaoshi Yin, Xiangji Huang
BioCLink: A Probabilistic Approach for Improving Genomics Search with Citation Links. 375-378 - Md. Muksitul Haque, Ananth Kalyanaraman, Amit Dhingra, Nehal Abu-Lail, Kaori Graybeal:
DNAjig: A New Approach for Building DNA Nanostructures. 379-383 - Sook Shin Ha
Enhancing Pathway Based Analysis Using Different Weighting Schemes. 384-387 - Yuanjian Feng, Guoqiang Yu, Tian-Li Wang, Ie-Ming Shih, Yue Joseph Wang:
Analyzing DNA Copy Number Changes Using Fused Margin Regression. 388-391 - Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. 392-395 - Yanpeng Li, Hongfei Lin, Zhihao Yang:
Applying Feature Coupling Generalization for Protein-Protein Interaction Extraction. 396-400 - Yixun Liu, Andriy Fedorov, Ron Kikinis, Nikos Chrisochoides:
Real-Time Non-rigid Registration of Medical Images on a Cooperative Parallel Architecture. 401-404 - Dongxiao Zhu, Guorong Xu, Lipi R. Acharya:
A Generalized Multivariate Approach for Correlation-Based Pattern Discovery from Replicated Molecular Profiling Data. 405-410 - Bi-Hua Cheng, Harsha Gopal Goud Vaka, Snehasis Mukhopadhyay:
A Genetic Association Study between Breast Cancer and Osteoporosis Using Transitive Text Mining. 411-414 - Linlin Shao, Yuehui Chen:
Bacterial Foraging Optimization Algorithm Integrating Tabu Search for Motif Discovery. 415-418 - Hashmat Rohian, Aijun An, Jiashu Zhao, Xiangji Huang
Discovering Temporal Associations among Significant Changes in Gene Expression. 419-423 - Fan Zhang, Jianjun Hu:
Bayesian Classifier for Anchored Protein Sorting Discovery. 424-428
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