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10. CMSB 2012: London, UK
- David R. Gilbert, Monika Heiner:
Computational Methods in Systems Biology - 10th International Conference, CMSB 2012, London, UK, October 3-5, 2012. Proceedings. Lecture Notes in Computer Science 7605, Springer 2012, ISBN 978-3-642-33635-5
Invited Talks
- Denis Noble:
Differential and Integral Views of Gene-Phenotype Relations: A Systems Biological Insight. 1 - Matthew Gibb, Rebecca Burton
, Christian Bollensdorff, Carlos Afonso, Tahier Mansoori, Ulrich Schotten
, David Gavaghan, Blanca Rodríguez, Jürgen E. Schneider, Peter Kohl
, Vicente Grau
:
Resolving the Three-Dimensional Histology of the Heart. 2-16 - Maciej Dobrzynski
, Dirk Fey, Lan K. Nguyen, Boris N. Kholodenko
:
Bimodal Protein Distributions in Heterogeneous Oscillating Systems. 17-28
Regular Papers
- Paolo Ballarini, Jarno Mäkelä, Andre S. Ribeiro
:
Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics. 29-48 - Kirill Batmanov, Céline Kuttler, François Lemaire
, Cédric Lhoussaine, Cristian Versari:
Symmetry-Based Model Reduction for Approximate Stochastic Analysis. 49-68 - Laura Bennett, Artem Lysenko
, Lazaros G. Papageorgiou
, Martin Urban
, Kim E. Hammond-Kosack
, Christopher J. Rawlings, Mansoor A. S. Saqi, Sophia Tsoka
:
Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum. 69-86 - Mary Ann Blätke
, Monika Heiner
, Wolfgang Marwan:
Predicting Phenotype from Genotype through Automatically Composed Petri Nets. 87-106 - Alfonso Carta, Madalena Chaves
, Jean-Luc Gouzé
:
A Simple Model to Control Growth Rate of Synthetic E. coli during the Exponential Phase: Model Analysis and Parameter Estimation. 107-126 - Jole Costanza
, Giovanni Carapezza, Claudio Angione
, Pietro Liò
, Giuseppe Nicosia
:
Multi-objective Optimisation, Sensitivity and Robustness Analysis in FBA Modelling. 127-147 - Franck Delaplace, Hanna Klaudel, Tarek Melliti, Sylvain Sené:
Analysis of Modular Organisation of Interaction Networks Based on Asymptotic Dynamics. 148-165 - Maxime Folschette
, Loïc Paulevé, Katsumi Inoue
, Morgan Magnin, Olivier F. Roux:
Concretizing the Process Hitting into Biological Regulatory Networks. 166-186 - Ibuki Kawamata, Nathanael Aubert
, Masahiro Hamano
, Masami Hagiya:
Abstraction of Graph-Based Models of Bio-molecular Reaction Systems for Efficient Simulation. 187-206 - Hannes Klarner, Adam Streck, David Safránek
, Juraj Kolcák
, Heike Siebert:
Parameter Identification and Model Ranking of Thomas Networks. 207-226 - David Marco, Erin Scott, David E. Cairns, Andrea Graham
, Judi Allen
, Simmi Mahajan, Carron Shankland
:
Investigating Co-infection Dynamics through Evolution of Bio-PEPA Model Parameters: A Combined Process Algebra and Evolutionary Computing Approach. 227-246 - Miguel A. Martínez-del-Amor
, Ignacio Pérez-Hurtado
, Adolfo Gastalver-Rubio
, Anne C. Elster
, Mario J. Pérez-Jiménez
:
Population Dynamics P Systems on CUDA. 247-266 - Abhishek Murthy, Md. Ariful Islam, Ezio Bartocci
, Elizabeth Cherry
, Flavio H. Fenton, James Glimm, Scott A. Smolka, Radu Grosu:
Approximate Bisimulations for Sodium Channel Dynamics. 267-287 - Aurélien Naldi
, Pedro T. Monteiro
, Claudine Chaouiya
:
Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control. 288-306 - Ilya Potapov, Jarno Mäkelä, Olli Yli-Harja
, Andre S. Ribeiro
:
Sequence Dependent Properties of the Expression Dynamics of Genes and Gene Networks. 307-321 - Sriram Sankaranarayanan, Georgios Fainekos
:
Simulating Insulin Infusion Pump Risks by In-Silico Modeling of the Insulin-Glucose Regulatory System. 322-341 - Santiago Videla, Carito Guziolowski
, Federica Eduati
, Sven Thiele
, Niels Grabe
, Julio Saez-Rodriguez
, Anne Siegel:
Revisiting the Training of Logic Models of Protein Signaling Networks with ASP. 342-361
Flash Posters
- Mary Ann Blätke
, Anna Dittrich
, Monika Heiner
, Fred Schaper
, Wolfgang Marwan:
JAK-STAT Signalling as Example for a Database-Supported Modular Modelling Concept. 362-365 - Joseph O. Dada
, Pedro Mendes:
ManyCell: A Multiscale Simulator for Cellular Systems. 366-369 - François Fages, Steven Gay, Sylvain Soliman
:
Inferring Reaction Models from ODEs. 370-373 - Vashti Galpin
:
Modelling Trafficking of Proteins within the Mammalian Cell Using Bio-PEPA. 374-377 - Russell Harmer, Jean Krivine, Élise Laruelle, Cédric Lhoussaine, Guillaume Madelaine, Mirabelle Nebut:
Models of Tet-On System with Epigenetic Effects. 378-381 - Asta Laiho, András Király, Attila Gyenesei:
GeneFuncster: A Web Tool for Gene Functional Enrichment Analysis and Visualisation. 382-385 - Ilya Potapov, Evgenii I. Volkov:
Effects of Molecular Noise on the Multistability in a Synthetic Genetic Oscillator. 386-389 - Larisa N. Soldatova, Qian Gao, David R. Gilbert:
Towards an Ontology of Biomodelling. 390-393
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