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Daniel Sage

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affiliation: Swiss Federal Institute of Technology in Lausanne, Switzerland

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2020 – today

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2022
[j11]
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  - journals/bioinformatics/UhlmannPDUSF22
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Virginie Uhlmann, Zsuzsanna Püspöki, Adrien Depeursinge, Michael Unser, Daniel Sage, Julien Fageot:
Steer'n'Detect: fast 2D template detection with accurate orientation estimation. Bioinform. 38(11): 3146-3148 (2022)
[j10]
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Virginie Uhlmann, Laurène Donati, Daniel Sage:
A Practical Guide to Supervised Deep Learning for Bioimage Analysis: Challenges and good practices. IEEE Signal Process. Mag. 39(2): 73-86 (2022)
[i6]
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  - journals/corr/abs-2212-08568
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Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali, Anubha Gupta, Jan Kybic, J. Alison Noble, Carlos Ortiz-de-Solórzano, Samiksha Pachade, Caroline Petitjean, Daniel Sage, Donglai Wei, Elizabeth Wilden, Deepak Alapatt, Vincent Andrearczyk, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Vivek Singh Bawa, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Jinwook Choi, Olivier Commowick, Marie Daum, Adrien Depeursinge, Reuben Dorent, Jan Egger, Hannah Eichhorn, Sandy Engelhardt, Melanie Ganz, Gabriel Girard, Lasse Hansen, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Hyunjeong Kim, Bennett A. Landman, Hongwei Bran Li, Jianning Li, Jun Ma, Anne L. Martel, et al.:
Biomedical image analysis competitions: The state of current participation practice. CoRR abs/2212.08568 (2022)
2021
[c14]
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  - conf/isbi/DenoyellePPSU21
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Quentin Denoyelle, Thanh-An Pham, Pol del Aguila Pla, Daniel Sage, Michael Unser:
Optimal-Transport-Based Metric For SMLM. ISBI 2021: 797-801
[c13]
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  - conf/isbi/PouryaAUS21
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Mehrsa Pourya, Shayan Aziznejad, Michael Unser, Daniel Sage:
Graphic: Graph-Based Hierarchical Clustering For Single-Molecule Localization Microscopy. ISBI 2021: 1892-1896
2020
[c12]
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  - conf/eccv/ZhouHSLSS20
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Ruofan Zhou, Majed El Helou, Daniel Sage, Thierry Laroche, Arne Seitz, Sabine Süsstrunk:
W2S: Microscopy Data with Joint Denoising and Super-Resolution for Widefield to SIM Mapping. ECCV Workshops (1) 2020: 474-491
[d1]
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Ruofan Zhou, Majed El Helou, Daniel Sage, Thierry Laroche, Arne Seitz, Sabine Süsstrunk:
W2S: Widefield2SIM Raw Dataset. Zenodo, 2020
[i5]
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  - journals/corr/abs-2003-05961
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Ruofan Zhou, Majed El Helou, Daniel Sage, Thierry Laroche, Arne Seitz, Sabine Süsstrunk:
W2S: A Joint Denoising and Super-Resolution Dataset. CoRR abs/2003.05961 (2020)
[i4]
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  - journals/corr/abs-2010-13423
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Quentin Denoyelle, Thanh-An Pham, Pol del Aguila Pla, Daniel Sage, Michael Unser:
Optimal transport-based metric for SMLM. CoRR abs/2010.13423 (2020)

2010 – 2019

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2019
[c11]
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  - conf/isbi/PhamSSU19
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Thanh-An Pham, Emmanuel Soubies, Daniel Sage, Michael Unser:
Closed-Form Expression Of The Fourier Ring-Correlation For Single-Molecule Localization Microscopy. ISBI 2019: 321-324
[c10]
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  - conf/isbi/BadoualGSU19
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Anais Badoual, Aymeric Galan, Daniel Sage, Michael Unser:
Deforming Tessellations For The Segmentation Of Cell Aggregates. ISBI 2019: 1013-1017
2018
[i3]
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  - journals/corr/abs-1812-07908
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Emmanuel Soubies, Ferréol Soulez, Michael T. McCann, Thanh-An Pham, Laurène Donati, Thomas Debarre, Daniel Sage, Michael Unser:
Pocket Guide to Solve Inverse Problems with GlobalBioIm. CoRR abs/1812.07908 (2018)
2016
[j9]
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  - journals/bioinformatics/PuspokiSWU16
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Zsuzsanna Püspöki, Daniel Sage, John Paul Ward, Michael Unser:
SpotCaliper: fast wavelet-based spot detection with accurate size estimation. Bioinform. 32(8): 1278-1280 (2016)
[j8]
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  - journals/siamis/PuspokiWSU16
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Zsuzsanna Püspöki, John Paul Ward, Daniel Sage, Michael Unser:
On the Continuous Steering of the Scale of Tight Wavelet Frames. SIAM J. Imaging Sci. 9(3): 1042-1062 (2016)
[j7]
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  - journals/tip/BostanFNSU16
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Emrah Bostan, Emmanuel Froustey, Masih Nilchian, Daniel Sage, Michael Unser:
Variational Phase Imaging Using the Transport-of-Intensity Equation. IEEE Trans. Image Process. 25(2): 807-817 (2016)
2015
[c9]
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Zsuzsanna Püspöki, John Paul Ward, Daniel Sage, Michael Unser:
Fast detection and refined scale estimation using complex isotropic wavelets. ISBI 2015: 512-515
[i2]
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Zsuzsanna Püspöki, John Paul Ward, Daniel Sage, Michael Unser:
On The Continuous Steering of the Scale of Tight Wavelet Frames. CoRR abs/1512.02072 (2015)
2014
[c8]
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  - conf/icip/BostanFRSSU14
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Emrah Bostan, Emmanuel Froustey, Benjamin Rappaz, Etienne Shaffer, Daniel Sage, Michael Unser:
Phase retrieval by using transport-of-intensity equation and differential interference contrast microscopy. ICIP 2014: 3939-3943
2013
[c7]
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  - conf/eusipco/SageKVLU13
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Daniel Sage, Hagai Kirshner, Cédric Vonesch, Stamatios Lefkimmiatis, Michael Unser:
Benchmarking image-processing algorithms for biomicroscopy: Reference datasets and perspectives. EUSIPCO 2013: 1-4
[c6]
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  - conf/eusipco/UnserSD13
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Michael Unser, Daniel Sage, Ricard Delgado-Gonzalo:
Advanced image processing for biology, and the Open Bio Image Alliance (OBIA). EUSIPCO 2013: 1-5
2012
[j6]
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  - journals/bmcbi/WustnerSLSSL12
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Daniel Wüstner, Lukasz M. Solanko, Frederik W. Lund, Daniel Sage, Hans J. Schroll, Michael A. Lomholt:
Quantitative fluorescence loss in photobleaching for analysis of protein transport and aggregation. BMC Bioinform. 13: 296 (2012)
[j5]
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  - journals/tip/ThevenazSU12
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Philippe Thévenaz, Daniel Sage, Michael Unser:
Bi-Exponential Edge-Preserving Smoother. IEEE Trans. Image Process. 21(9): 3924-3936 (2012)
[c5]
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  - conf/isbi/KirshnerPOSMU12
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Hagai Kirshner, Thomas Pengo, Nicolas Olivier, Daniel Sage, Suliana Manley, Michael Unser:
A PSF-based approach to Biplane calibration in 3D super-resolution microscopy. ISBI 2012: 1232-1235
2011
[j4]
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  - journals/tip/ChaudhurySU11
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Kunal Narayan Chaudhury, Daniel Sage, Michael Unser:
Fast O(1) Bilateral Filtering Using Trigonometric Range Kernels. IEEE Trans. Image Process. 20(12): 3376-3382 (2011)
[i1]
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  - journals/corr/abs-1105-4204
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Kunal Narayan Chaudhury, Daniel Sage, Michael Unser:
Fast O(1) bilateral filtering using trigonometric range kernels. CoRR abs/1105.4204 (2011)
2010
[c4]
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  - conf/isbi/ChaudhuryPMSU10
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Kunal Narayan Chaudhury, Zsuzsanna Püspöki, Arrate Muñoz-Barrutia, Daniel Sage, Michael Unser:
Fast detection of cells using a continuously scalable Mexican-hat-like template. ISBI 2010: 1277-1280

2000 – 2009

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2009
[j3]
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  - journals/tip/UnserSV09
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Michael Unser, Daniel Sage, Dimitri Van De Ville:
Multiresolution Monogenic Signal Analysis Using the Riesz-Laplace Wavelet Transform. IEEE Trans. Image Process. 18(11): 2402-2418 (2009)
2008
[c3]
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  - conf/eusipco/VilleSBU08
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Dimitri Van De Ville, Daniel Sage, Katarina Balac, Michael Unser:
The Marr wavelet pyramid and multiscale directional image analysis. EUSIPCO 2008: 1-5
2005
[j2]
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  - journals/tip/SageNHGU05
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Daniel Sage, Franck R. Neumann, Florence Hediger, Susan M. Gasser, Michael Unser:
Automatic Tracking of Individual Fluorescence Particles: Application to the Study of Chromosome Dynamics. IEEE Trans. Image Process. 14(9): 1372-1383 (2005)
2004
[c2]
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  - conf/isbi/ForsterVBSU04
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Brigitte Forster, Dimitri Van De Ville, Jesse Berent, Daniel Sage, Michael Unser:
Extended Depth-of-Focus for Multi-Channel Microscopy Images: A Complex Wavelet Approach. ISBI 2004: 660-663
2003
[j1]
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  - journals/spm/SageU03
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Daniel Sage, Michael Unser:
Teaching image-processing programming in Java. IEEE Signal Process. Mag. 20(6): 43-52 (2003)
2001
[c1]
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  - conf/icip/SageU01
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Daniel Sage, Michael Unser:
Easy Java programming for teaching image-processing. ICIP (3) 2001: 298-301

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