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Francesco Ciompi
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2020 – today
- 2024
- [j25]Eduard Chelebian
, Christophe Avenel
DEPICTER: Deep representation clustering for histology annotation. Comput. Biol. Medicine 170: 108026 (2024) - [j24]Niccolò Marini
Multimodal representations of biomedical knowledge from limited training whole slide images and reports using deep learning. Medical Image Anal. 97: 103303 (2024) - [j23]Yiping Jiao
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. IEEE J. Biomed. Health Informatics 28(3): 1161-1172 (2024) - [c34]Nohemí Sofia León Contreras
Benchmarking Hierarchical Image Pyramid Transformer for the Classification of Colon Biopsies and Polyps Histopathology Images. ISBI 2024: 1-4 - [c33]Carlijn M. Lems, Daan J. Geijs, John-Melle Bokhorst, Maxime Sülter, Leander van Eekelen, Francesco Ciompi:
Color Deconvolution for Color-Agnostic and Cross-Modality Analysis of Immunohistochemistry Whole-Slide Images with Deep Learning. ISBI 2024: 1-4 - [c32]Cristian Tommasino, Cristiano Russo, Antonio Maria Rinaldi, Francesco Ciompi:
"HoVer-UNet": Accelerating Hovernet with Unet-Based Multi-Class Nuclei Segmentation Via Knowledge Distillation. ISBI 2024: 1-4 - [i22]Karina Silina, Francesco Ciompi:
Hitchhiker's guide to cancer-associated lymphoid aggregates in histology images: manual and deep learning-based quantification approaches. CoRR abs/2403.04142 (2024) - [i21]Nadieh Khalili, Joey Spronck, Francesco Ciompi, Jeroen van der Laak, Geert Litjens:
Uncertainty-guided annotation enhances segmentation with the human-in-the-loop. CoRR abs/2404.07208 (2024) - [i20]Nohemí Sofia León Contreras, Marina D'Amato, Francesco Ciompi, Clément Grisi, Witali Aswolinskiy, Simona Vatrano, Filippo Fraggetta, Iris Nagtegaal:
Benchmarking Hierarchical Image Pyramid Transformer for the classification of colon biopsies and polyps in histopathology images. CoRR abs/2405.15127 (2024) - 2023
- [j22]Marc Aubreville
Mitosis domain generalization in histopathology images - The MIDOG challenge. Medical Image Anal. 84: 102699 (2023) - [c31]Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Mitko Veta, Katharina Breininger:
Abstract: the MIDOG Challenge 2021 - Mitosis Domain Generalization in Histopathology Images. Bildverarbeitung für die Medizin 2023: 115 - [c30]Joey Spronck, Thijs Gelton, Leander van Eekelen, Joep Bogaerts, Leslie Tessier, Mart van Rijthoven, Lieke van der Woude, Michel van den Heuvel, Willemijn Theelen, Jeroen van der Laak, Francesco Ciompi:
nnUNet meets pathology: Bridging the gap for application to whole slide images and computational biomarkers. MIDL 2023: 1859-1874 - [i19]Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathon Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Thomas Watson, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi:
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. CoRR abs/2301.06304 (2023) - [i18]Cristian Tommasino, Cristiano Russo, Antonio Maria Rinaldi, Francesco Ciompi:
"HoVer-UNet": Accelerating HoVerNet with UNet-based multi-class nuclei segmentation via knowledge distillation. CoRR abs/2311.12553 (2023) - 2022
- [j21]Niccolò Marini
Unleashing the potential of digital pathology data by training computer-aided diagnosis models without human annotations. npj Digit. Medicine 5 (2022) - [i17]Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch
Mitosis domain generalization in histopathology images - The MIDOG challenge. CoRR abs/2204.03742 (2022) - [i16]Eduard Chelebian, Francesco Ciompi, Carolina Wählby:
Seeded iterative clustering for histology region identification. CoRR abs/2211.07425 (2022) - 2021
- [j20]Niccolò Marini, Sebastian Otálora, Damian Podareanu
Multi_Scale_Tools: A Python Library to Exploit Multi-Scale Whole Slide Images. Frontiers Comput. Sci. 3: 684521 (2021) - [j19]Mart van Rijthoven, Maschenka Balkenhol, Karina Silina
HookNet: Multi-resolution convolutional neural networks for semantic segmentation in histopathology whole-slide images. Medical Image Anal. 68: 101890 (2021) - [j18]David Tellez
Neural Image Compression for Gigapixel Histopathology Image Analysis. IEEE Trans. Pattern Anal. Mach. Intell. 43(2): 567-578 (2021) - [j17]Francesco Ciompi, Mitko Veta
Editorial Computational Pathology. IEEE J. Biomed. Health Informatics 25(2): 303-306 (2021) - [c29]Niccolò Marini, Sebastian Otálora, Francesco Ciompi, Gianmaria Silvello, Stefano Marchesin, Simona Vatrano, Genziana Buttafuoco, Manfredo Atzori, Henning Müller:
Multi-Scale Task Multiple Instance Learning for the Classification of Digital Pathology Images with Global Annotations. COMPAY@MICCAI 2021: 170-181 - [c28]Rutger H. J. Fick, Brice Tayart, Capucine Bertrand, Solene Chan-Lang, Tina Rey, Francesco Ciompi, Cyprien Tilmant, Isabelle Farré, Saima Ben Hadj:
A Partial Label-Based Machine Learning Approach For Cervical Whole-Slide Image Classification: The Winning TissueNet Solution*. EMBC 2021: 2127-2131 - [c27]Witali Aswolinskiy, David Tellez, Gabriel Raya, Lieke van der Woude, Monika Looijen-Salamon, Jeroen van der Laak
Neural image compression for non-small cell lung cancer subtype classification in H&E stained whole-slide images. Digital Pathology 2021 - [c26]Mart van Rijthoven, Maschenka Balkenhol, Manfredo Atzori, Peter Bult, Jeroen van der Laak
Few-shot weakly supervised detection and retrieval in histopathology whole-slide images. Digital Pathology 2021 - [e2]Manfredo Atzori, Nikolay Burlutskiy, Francesco Ciompi, Zhang Li, Fayyaz A. Minhas, Henning Müller, Tingying Peng, Nasir M. Rajpoot, Ben Torben-Nielsen, Jeroen van der Laak, Mitko Veta, Yinyin Yuan, Inti Zlobec:
MICCAI Workshop on Computational Pathology, COMPAY@MICCAI 2021, 27 September 2021, Virtual Event. Proceedings of Machine Learning Research 156, PMLR 2021 [contents] - [i15]Marc Aubreville, Christof Bertram, Mitko Veta, Robert Klopfleisch, Nikolas Stathonikos, Katharina Breininger, Natalie D. ter Hoeve, Francesco Ciompi, Andreas Maier:
Quantifying the Scanner-Induced Domain Gap in Mitosis Detection. CoRR abs/2103.16515 (2021) - [i14]John-Melle Bokhorst, Iris D. Nagtegaal, Filippo Fraggetta, Simona Vatrano, Wilma Mesker, Michael Vieth, Jeroen van der Laak, Francesco Ciompi:
Automated risk classification of colon biopsies based on semantic segmentation of histopathology images. CoRR abs/2109.07892 (2021) - 2020
- [c25]Caner Mercan, G. C. A. M. Mooij, David Tellez, Johannes Lotz
Virtual Staining for Mitosis Detection in Breast Histopathology. ISBI 2020: 1770-1774 - [c24]David Tellez, Diederik Höppener, Cornelis Verhoef, Dirk J. Grünhagen, Pieter Nierop, Michal Drozdzal, Jeroen van der Laak, Francesco Ciompi:
Extending Unsupervised Neural Image Compression With Supervised Multitask Learning. MIDL 2020: 770-783 - [c23]Zaneta Swiderska-Chadaj, Karolina Nurzynska, Bartlomiej Grala, Katrien Grunberg, Lieke van der Woude, Monika Looijen-Salamon, Ann E. Walts, Tomasz Markiewicz, Francesco Ciompi, Arkadiusz Gertych
A deep learning approach to assess the predominant tumor growth pattern in whole-slide images of lung adenocarcinoma. Digital Pathology 2020: 113200D - [i13]Caner Mercan, Germonda Reijnen-Mooij, David Tellez Martin, Johannes Lotz
Virtual staining for mitosis detection in Breast Histopathology. CoRR abs/2003.07801 (2020) - [i12]David Tellez, Diederik Höppener, Cornelis Verhoef, Dirk J. Grünhagen, Pieter Nierop, Michal Drozdzal, Jeroen van der Laak, Francesco Ciompi:
Extending Unsupervised Neural Image Compression With Supervised Multitask Learning. CoRR abs/2004.07041 (2020) - [i11]Mart van Rijthoven, Maschenka Balkenhol, Karina Silina, Jeroen van der Laak, Francesco Ciompi:
HookNet: multi-resolution convolutional neural networks for semantic segmentation in histopathology whole-slide images. CoRR abs/2006.12230 (2020) - [i10]Caner Mercan, Maschenka Balkenhol, Roberto Salgado, Mark Sherman, Philippe Vielh, Willem Vreuls, António Polónia, Hugo M. Horlings, Wilko Weichert, Jodi M. Carter, Peter Bult, Matthias Christgen, Carsten Denkert, Koen van de Vijver, Jeroen van der Laak, Francesco Ciompi:
Automated Scoring of Nuclear Pleomorphism Spectrum with Pathologist-level Performance in Breast Cancer. CoRR abs/2012.04974 (2020)
2010 – 2019
- 2019
- [j16]Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann
Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge. Medical Image Anal. 54: 111-121 (2019) - [j15]Zaneta Swiderska-Chadaj
Learning to detect lymphocytes in immunohistochemistry with deep learning. Medical Image Anal. 58 (2019) - [j14]David Tellez
Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology. Medical Image Anal. 58 (2019) - [c22]John-Melle Bokhorst, Hans Pinckaers, Peter van Zwam, Iris Nagtegaal, Jeroen van der Laak, Francesco Ciompi:
Learning from sparsely annotated data for semantic segmentation in histopathology images. MIDL 2019: 84-91 - [i9]David Tellez, Geert Litjens, Péter Bándi, Wouter Bulten, John-Melle Bokhorst, Francesco Ciompi, Jeroen van der Laak:
Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology. CoRR abs/1902.06543 (2019) - [i8]Nick Pawlowski, Suvrat Bhooshan, Nicolas Ballas, Francesco Ciompi, Ben Glocker, Michal Drozdzal:
Needles in Haystacks: On Classifying Tiny Objects in Large Images. CoRR abs/1908.06037 (2019) - 2018
- [j13]David Tellez
Whole-Slide Mitosis Detection in H&E Breast Histology Using PHH3 as a Reference to Train Distilled Stain-Invariant Convolutional Networks. IEEE Trans. Medical Imaging 37(9): 2126-2136 (2018) - [c21]John-Melle Bokhorst, Lucia Rijstenberg, Danny Goudkade, Iris Nagtegaal
Automatic Detection of Tumor Budding in Colorectal Carcinoma with Deep Learning. COMPAY/OMIA@MICCAI 2018: 130-138 - [c20]David Tellez, Maschenka Balkenhol, Nico Karssemeijer, Geert Litjens
H&E stain augmentation improves generalization of convolutional networks for histopathological mitosis detection. Digital Pathology 2018: 105810Z - [e1]Danail Stoyanov, Zeike Taylor, Francesco Ciompi, Yanwu Xu, Anne L. Martel, Lena Maier-Hein, Nasir M. Rajpoot, Jeroen van der Laak, Mitko Veta, Stephen J. McKenna
Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16-20, 2018, Proceedings. Lecture Notes in Computer Science 11039, Springer 2018, ISBN 978-3-030-00948-9 [contents] - [i7]Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann, Karl Rohr, Manan A. Shah, Dayong Wang, Mikaël Rousson, Martin Hedlund, David Tellez, Francesco Ciompi, Erwan Zerhouni, David Lanyi, Matheus Palhares Viana, Vassili Kovalev, Vitali Liauchuk, Hady Ahmady Phoulady, Talha Qaiser, Simon Graham, Nasir M. Rajpoot, Erik Sjöblom, Jesper Molin, Kyunghyun Paeng, Sangheum Hwang, Sunggyun Park, Zhipeng Jia, Eric I-Chao Chang, Yan Xu, Andrew H. Beck, Paul J. van Diest, Josien P. W. Pluim:
Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge. CoRR abs/1807.08284 (2018) - [i6]David Tellez, Maschenka Balkenhol, Irene Otte-Höller, Rob van de Loo, Rob Vogels, Peter Bult, Carla Wauters, Willem Vreuls, Suzanne Mol, Nico Karssemeijer, Geert Litjens, Jeroen van der Laak, Francesco Ciompi:
Whole-Slide Mitosis Detection in H&E Breast Histology Using PHH3 as a Reference to Train Distilled Stain-Invariant Convolutional Networks. CoRR abs/1808.05896 (2018) - [i5]David Tellez, Geert Litjens, Jeroen van der Laak, Francesco Ciompi:
Neural Image Compression for Gigapixel Histopathology Image Analysis. CoRR abs/1811.02840 (2018) - 2017
- [j12]Jean-Paul Charbonnier, Eva M. van Rikxoort
Improving airway segmentation in computed tomography using leak detection with convolutional networks. Medical Image Anal. 36: 52-60 (2017) - [j11]Geert Litjens
A survey on deep learning in medical image analysis. Medical Image Anal. 42: 60-88 (2017) - [c19]Francesco Ciompi
The importance of stain normalization in colorectal tissue classification with convolutional networks. ISBI 2017: 160-163 - [c18]Péter Bándi, Rob van de Loo, Milad Intezar, Daan Geijs, Francesco Ciompi
Comparison of different methods for tissue segmentation in histopathological whole-slide images. ISBI 2017: 591-595 - [c17]Simone Balocco
Intra-coronary Stent Localization in Intravascular Ultrasound Sequences, A Preliminary Study. CVII-STENT/LABELS@MICCAI 2017: 12-19 - [i4]Geert Litjens, Thijs Kooi, Babak Ehteshami Bejnordi, Arnaud Arindra Adiyoso Setio, Francesco Ciompi, Mohsen Ghafoorian, Jeroen A. W. M. van der Laak, Bram van Ginneken, Clara I. Sánchez:
A Survey on Deep Learning in Medical Image Analysis. CoRR abs/1702.05747 (2017) - [i3]Francesco Ciompi, Oscar Geessink, Babak Ehteshami Bejnordi, Gabriel Silva de Souza, Alexi Baidoshvili, Geert Litjens, Bram van Ginneken, Iris Nagtegaal, Jeroen van der Laak:
The importance of stain normalization in colorectal tissue classification with convolutional networks. CoRR abs/1702.05931 (2017) - [i2]Péter Bándi, Rob van de Loo, Milad Intezar, Daan Geijs, Francesco Ciompi, Bram van Ginneken, Jeroen van der Laak, Geert Litjens:
Comparison of Different Methods for Tissue Segmentation in Histopathological Whole-Slide Images. CoRR abs/1703.05990 (2017) - 2016
- [j10]Jean-Paul Charbonnier, Monique Brink, Francesco Ciompi
Automatic Pulmonary Artery-Vein Separation and Classification in Computed Tomography Using Tree Partitioning and Peripheral Vessel Matching. IEEE Trans. Medical Imaging 35(3): 882-892 (2016) - [j9]Arnaud Arindra Adiyoso Setio, Francesco Ciompi
Pulmonary Nodule Detection in CT Images: False Positive Reduction Using Multi-View Convolutional Networks. IEEE Trans. Medical Imaging 35(5): 1160-1169 (2016) - [c16]Nikolas Leßmann
Deep convolutional neural networks for automatic coronary calcium scoring in a screening study with low-dose chest CT. Computer-Aided Diagnosis 2016: 978511 - [i1]Francesco Ciompi, Kaman Chung, Sarah J. van Riel, Arnaud Arindra Adiyoso Setio, Paul K. Gerke, Colin Jacobs, Ernst Th. Scholten, Cornelia Schaefer-Prokop, Mathilde M. W. Wille, Alfonso Marchiano, Ugo Pastorino, Mathias Prokop, Bram van Ginneken:
Towards automatic pulmonary nodule management in lung cancer screening with deep learning. CoRR abs/1610.09157 (2016) - 2015
- [j8]Francesco Ciompi
Automatic classification of pulmonary peri-fissural nodules in computed tomography using an ensemble of 2D views and a convolutional neural network out-of-the-box. Medical Image Anal. 26(1): 195-202 (2015) - [j7]Francesco Ciompi
Bag-of-Frequencies: A Descriptor of Pulmonary Nodules in Computed Tomography Images. IEEE Trans. Medical Imaging 34(4): 962-973 (2015) - [c15]Bram van Ginneken
Off-the-shelf convolutional neural network features for pulmonary nodule detection in computed tomography scans. ISBI 2015: 286-289 - [c14]Arnaud A. A. Setio, Colin Jacobs
Computer-aided detection of lung cancer: combining pulmonary nodule detection systems with a tumor risk prediction model. Computer-Aided Diagnosis 2015: 94141O - [c13]Francesco Ciompi
Automatic detection of spiculation of pulmonary nodules in computed tomography images. Computer-Aided Diagnosis 2015: 941409 - 2014
- [j6]Simone Balocco
Standardized evaluation methodology and reference database for evaluating IVUS image segmentation. Comput. Medical Imaging Graph. 38(2): 70-90 (2014) - [j5]Carlo Gatta, Francesco Ciompi
Stacked Sequential Scale-SpaceTaylor Context. IEEE Trans. Pattern Anal. Mach. Intell. 36(8): 1694-1700 (2014) - [j4]Francesco Ciompi
ECOC-DRF: Discriminative random fields based on error correcting output codes. Pattern Recognit. 47(6): 2193-2204 (2014) - 2013
- [c12]Francesco Ciompi, Rui Hua, Simone Balocco
Learning to Detect Stent Struts in Intravascular Ultrasound. IbPRIA 2013: 575-583 - [c11]Francesco Ciompi, Simone Balocco
Stent Shape Estimation through a Comprehensive Interpretation of Intravascular Ultrasound Images. MICCAI (2) 2013: 345-352 - 2012
- [j3]Francesco Ciompi
HoliMAb: A holistic approach for Media-Adventitia border detection in intravascular ultrasound. Medical Image Anal. 16(6): 1085-1100 (2012) - [j2]Marina Alberti, Simone Balocco
Automatic Bifurcation Detection in Coronary IVUS Sequences. IEEE Trans. Biomed. Eng. 59(4): 1022-1031 (2012) - 2011
- [j1]José C. R. Seabra, Francesco Ciompi, Oriol Pujol
Rayleigh Mixture Model for Plaque Characterization in Intravascular Ultrasound. IEEE Trans. Biomed. Eng. 58(5): 1314-1324 (2011) - [c10]Marina Alberti, Carlo Gatta, Simone Balocco
Automatic Branching Detection in IVUS Sequences. IbPRIA 2011: 126-133 - [c9]Simone Balocco
Combining Growcut and Temporal Correlation for IVUS Lumen Segmentation. IbPRIA 2011: 556-563 - [c8]Francesco Ciompi, Oriol Pujol
A Holistic Approach for the Detection of Media-Adventitia Border in IVUS. MICCAI (3) 2011: 411-419 - 2010
- [c7]Francesco Ciompi, Oriol Pujol
A Meta-Learning Approach to Conditional Random Fields Using Error-Correcting Output Codes. ICPR 2010: 710-713 - [c6]José C. R. Seabra, João M. Sanches
Ultrasonographic plaque characterization using a Rayleigh mixture model. ISBI 2010: 1-4 - [c5]Carlo Gatta, Simone Balocco
Real-Time Gating of IVUS Sequences Based on Motion Blur Analysis: Method and Quantitative Validation. MICCAI (2) 2010: 59-67
2000 – 2009
- 2009
- [c4]Francesco Ciompi, Oriol Pujol
On in-vitro and in-vivo IVUS data fusion. CCIA 2009: 147-156 - [c3]Francesco Ciompi, Oriol Pujol
Enhancing In-Vitro IVUS Data for Tissue Characterization. IbPRIA 2009: 241-248 - [c2]Carlo Gatta, Juan Diego Gomez Valencia, Francesco Ciompi, Oriol Rodriguez-Leor, Petia Radeva
Toward Robust Myocardial Blush Grade Estimation in Contrast Angiography. IbPRIA 2009: 249-256 - [c1]Francesco Ciompi
ECOC Random Fields for Lumen Segmentation in Radial Artery IVUS Sequences. MICCAI (1) 2009: 869-876
Coauthor Index
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last updated on 2024-12-10 20:43 CET by the dblp team
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