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K. Joeri van der Velde

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2020 – today

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2023
[j16]
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  - journals/datascience/DammeMBBCVVZCCHJSRB23
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Philip van Damme, Pablo Alarcón Moreno, César Henrique Bernabé, Alberto Cámara Ballesteros, Clémence M. A. Le Cornec, Bruna dos Santos Vieira, K. Joeri van der Velde, Shuxin Zhang, Claudio Carta, Ronald Cornet, Peter A. C. 't Hoen, Annika Jacobsen, Morris A. Swertz, Marco Roos, Nirupama Benis:
A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR. Data Sci. J. 22 (2023)
[j15]
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  - journals/ploscb/VisserJKMNVHGSH23
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Casper de Visser, Lennart F. Johansson, Purva Kulkarni, Hailiang Mei, Pieter B. T. Neerincx, K. Joeri van der Velde, Peter Horvatovich, Alain J. van Gool, Morris A. Swertz, Peter A. C. 't Hoen, Anna Niehues:
Ten quick tips for building FAIR workflows. PLoS Comput. Biol. 19(9) (2023)
[c2]
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Alberto Cámara Ballesteros, Nirupama Benis, César Henrique Bernabé, Inés de Oliveira Coelho, Clémence M. A. Le Cornec, Aylin Demir, Bruna dos Santos Vieira, Jose Antonio Ramírez, K. Joeri van der Velde, Shuxin Zhang, Ronald Cornet, Annika Jacobsen, Marco Roos, Franz Schaefer, Morris A. Swertz, Mark D. Wilkinson:
Surveyed common data access policies preferences amongst European Reference Networks. SWAT4HCLS 2023: 107-111
2022
[j14]
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  - journals/biomedsem/KaliyaperumalWM22
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Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos:
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. J. Biomed. Semant. 13(1): 9 (2022)
[j13]
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  - journals/distribledger/AlghazwiTVK22
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Mohammed Alghazwi, Fatih Turkmen, K. Joeri van der Velde, Dimka Karastoyanova:
Blockchain for Genomics: A Systematic Literature Review. Distributed Ledger Technol. Res. Pract. 1(2): 1-28 (2022)
2021
[i1]
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  - journals/corr/abs-2111-10153
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Mohammed Alghazwi, Fatih Turkmen, K. Joeri van der Velde, Dimka Karastoyanova:
Blockchain for Genomics: A Systematic Literature Review. CoRR abs/2111.10153 (2021)

2010 – 2019

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2019
[j12]
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  - journals/bioinformatics/VeldeICPESBAHKH19
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K. Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Mariska Slofstra, Ruggero Barbieri, Rudi Alberts, Dennis Hendriksen, Fleur D. L. Kelpin, Mark de Haan, Tommy de Boer, Sido Haakma, Connor Stroomberg, Salome Scholtens, Gert-Jan van de Geijn, Eleonora A. M. Festen, Rinse K. Weersma, Morris A. Swertz:
MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians. Bioinform. 35(6): 1076-1078 (2019)
2018
[c1]
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  - conf/eScience/LiVS18
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Shuang Li, K. Joeri van der Velde, Morris A. Swertz:
Machine Learning for Multi-Omics Data Integration and Variant Pathogenicity Estimation. eScience 2018: 301
2016
[j11]
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  - journals/bioinformatics/PangEHKJHBCWVDF16
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Chao Pang, David van Enckevort, Mark de Haan, Fleur D. L. Kelpin, Jonathan Jetten, Dennis Hendriksen, Tommy de Boer, Bart Charbon, Erwin Winder, K. Joeri van der Velde, Dany Doiron, Isabel Fortier, Hans L. Hillege, Morris A. Swertz:
MOLGENIS/connect: a system for semi-automatic integration of heterogeneous phenotype data with applications in biobanks. Bioinform. 32(14): 2176-2183 (2016)
2015
[j10]
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Chao Pang, Annet Sollie, Anna Sijtsma, Dennis Hendriksen, Bart Charbon, Mark de Haan, Tommy de Boer, Fleur D. L. Kelpin, Jonathan Jetten, K. Joeri van der Velde, Nynke Smidt, Rolf Sijmons, Hans L. Hillege, Morris A. Swertz:
SORTA: a system for ontology-based re-coding and technical annotation of biomedical phenotype data. Database J. Biol. Databases Curation 2015 (2015)
[j9]
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  - journals/bmcbi/ZychLVJLJA15
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Konrad Zych, Yang Li, K. Joeri van der Velde, Ronny Joosen, Wilco Ligterink, Ritsert C. Jansen, Danny Arends:
Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains. BMC Bioinform. 16: 51:1-51:8 (2015)
[j8]
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Chao Pang, Dennis Hendriksen, Martijn Dijkstra, K. Joeri van der Velde, Joël Kuiper, Hans L. Hillege, Morris A. Swertz:
BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing. J. Am. Medical Informatics Assoc. 22(1): 65-75 (2015)
[j7]
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Morris A. Swertz, K. Joeri van der Velde:
MOLGENIS/OMX for multi-omics and personalized medicine. J. Clin. Bioinform. 5(S-1): S5 (2015)
2014
[j6]
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  - journals/nar/VeldeHZASKJSL14
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K. Joeri van der Velde, Mark de Haan, Konrad Zych, Danny Arends, L. Basten Snoek, Jan E. Kammenga, Ritsert C. Jansen, Morris A. Swertz, Yang Li:
WormQTL^HD - a web database for linking human disease to natural variation data in C. elegans. Nucleic Acids Res. 42(Database-Issue): 794-801 (2014)
2013
[j5]
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  - journals/nar/SnoekVALBEFHHPRSSXJKS13
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L. Basten Snoek, K. Joeri van der Velde, Danny Arends, Yang Li, Antje Beyer, Mark Elvin, Jasmin Fisher, Alex Hajnal, Michael O. Hengartner, Gino B. Poulin, Miriam Rodriguez, Tobias Schmid, Sabine Schrimpf, Feng Xue, Ritsert C. Jansen, Jan E. Kammenga, Morris A. Swertz:
WormQTL - public archive and analysis web portal for natural variation data in Caenorhabditis spp. Nucleic Acids Res. 41(Database-Issue): 738-743 (2013)
2012
[j4]
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  - journals/bib/DurrantSAAMMPVJS12
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Caroline Durrant, Morris A. Swertz, Rudi Alberts, Danny Arends, Steffen Möller, Richard Mott, Pjotr Prins, K. Joeri van der Velde, Ritsert C. Jansen, Klaus Schughart:
Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs. Briefings Bioinform. 13(2): 135-142 (2012)
[j3]
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  - journals/bioinformatics/ArendsVPBMJS12
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Danny Arends, K. Joeri van der Velde, Pjotr Prins, Karl W. Broman, Steffen Möller, Ritsert C. Jansen, Morris A. Swertz:
xQTL workbench: a scalable web environment for multi-level QTL analysis. Bioinform. 28(7): 1042-1044 (2012)
2011
[j2]
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  - journals/bmcbi/AdamusiakBKVAAKPS11
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Tomasz Adamusiak, Tony Burdett, Natalja Kurbatova, K. Joeri van der Velde, Niran Abeygunawardena, Despoina Antonakaki, Misha Kapushesky, Helen E. Parkinson, Morris A. Swertz:
OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript. BMC Bioinform. 12: 218 (2011)
2010
[j1]
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  - journals/bmcbi/SwertzDAVKRLTABMBBJP10
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Morris A. Swertz, Martijn Dijkstra, Tomasz Adamusiak, K. Joeri van der Velde, Alexandros Kanterakis, Erik T. Roos, Joris Lops, Gudmundur A. Thorisson, Danny Arends, George Byelas, Juha Muilu, Anthony J. Brookes, Engbert O. de Brock, Ritsert C. Jansen, Helen E. Parkinson:
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button. BMC Bioinform. 11(S-12): S12 (2010)

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