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Andrew F. Neuwald
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2020 – today
- 2021
- [j17]Xu Shi
, Andrew F. Neuwald, Xiao Wang, Tian-Li Wang, Leena Hilakivi-Clarke, Robert Clarke
IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles. Bioinform. 37(5): 650-658 (2021) - [j16]Andrew F. Neuwald
eCOMPASS: evaluative comparison of multiple protein alignments by statistical score. Bioinform. 37(20): 3456-3463 (2021) - [j15]Xi Chen, Xu Shi
ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach. BMC Bioinform. 22(1): 193 (2021) - [j14]Xi Chen
ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements. PLoS Comput. Biol. 17(7) (2021) - [j13]Andrew F. Neuwald:
Reflections on the quest to obtain biological information from genomic data. Quant. Biol. 9(3): 251-254 (2021) - 2020
- [j12]Andrew F. Neuwald, Christopher J. Lanczycki, Theresa K. Hodges, Aron Marchler-Bauer:
Obtaining extremely large and accurate protein multiple sequence alignments from curated hierarchical alignments. Database J. Biol. Databases Curation 2020 (2020)
2010 – 2019
- 2018
- [j11]Stephen F. Altschul, Andrew F. Neuwald:
Initial Cluster Analysis. J. Comput. Biol. 25(2): 121-129 (2018) - [j10]Andrew F. Neuwald
Statistical investigations of protein residue direct couplings. PLoS Comput. Biol. 14(12) (2018) - 2016
- [j9]Andrew F. Neuwald, Stephen F. Altschul:
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties. PLoS Comput. Biol. 12(5) (2016) - [j8]Andrew F. Neuwald, Stephen F. Altschul:
Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations. PLoS Comput. Biol. 12(12) (2016) - 2014
- [j7]Andrew F. Neuwald:
A Bayesian Sampler for Optimization of Protein Domain Hierarchies. J. Comput. Biol. 21(3): 269-286 (2014) - [j6]Andrew F. Neuwald:
Evaluating, Comparing, and Interpreting Protein Domain Hierarchies. J. Comput. Biol. 21(4): 287-302 (2014) - 2012
- [j5]Andrew F. Neuwald, Christopher J. Lanczycki, Aron Marchler-Bauer
Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures. BMC Bioinform. 13: 144 (2012)
2000 – 2009
- 2009
- [j4]Andrew F. Neuwald:
Rapid detection, classification and accurate alignment of up to a million or more related protein sequences. Bioinform. 25(15): 1869-1875 (2009) - [j3]Andrew F. Neuwald:
Rapid detection, classification and accurate alignment of up to a million or more related protein sequences. Bioinform. 25(22): 3047 (2009) - 2004
- [j2]Andrew F. Neuwald, Jun S. Liu:
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model. BMC Bioinform. 5: 157 (2004) - 2000
- [j1]W. John Wilbur, Andrew F. Neuwald:
A Theory of Information with Special Application to Search Problems. Comput. Chem. 24(1): 33-42 (2000)
1990 – 1999
- 1994
- [c1]Charles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu:
A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences. HICSS (5) 1994: 245-254
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