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Ovidiu Radulescu
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2020 – today
- 2024
- [j25]Aurélien Desoeuvres
, Alexandru Iosif
Reduction of Chemical Reaction Networks with Approximate Conservation Laws. SIAM J. Appl. Dyn. Syst. 23(1): 256-296 (2024) - [j24]Aurélien Desoeuvres
A Computational Approach to Polynomial Conservation Laws. SIAM J. Appl. Dyn. Syst. 23(1): 813-854 (2024) - [j23]Eléa Thibault Greugny, François Fages
A skin microbiome model with AMP interactions and analysis of quasi-stability vs stability in population dynamics. Theor. Comput. Sci. 983: 114294 (2024) - 2023
- [c18]J. Arslan, Mehdi Ounissi, H. Luo, M. Lacroix, P. Dupré, P. Kumar, Arran Hodgkinson, S. Dandou, Romain M. Larive, C. Pignodel, L. Le Cam, Ovidiu Radulescu, Daniel Racoceanu:
Efficient 3D reconstruction of whole slide images in melanoma. Digital and Computational Pathology 2023 - [i7]Eléa Thibault Greugny, François Fages, Ovidiu Radulescu, Peter Szmolyan, Georgios N. Stamatas:
A Skin Microbiome Model with AMP interactions and Analysis of Quasi-Stability vs Stability in Population Dynamics. CoRR abs/2310.15201 (2023) - 2022
- [c17]Aurélien Desoeuvres
Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations. CMSB 2022: 61-85 - [i6]Christoph Lüders, Thomas Sturm, Ovidiu Radulescu:
ODEbase: A Repository of ODE Systems for Systems Biology. CoRR abs/2201.08980 (2022) - [i5]Aurélien Desoeuvres
Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations. CoRR abs/2205.07360 (2022) - 2021
- [j22]Niclas Kruff, Christoph Lüders
Algorithmic Reduction of Biological Networks with Multiple Time Scales. Math. Comput. Sci. 15(3): 499-534 (2021) - [j21]Guilherme C. P. Innocentini, Arran Hodgkinson, Fernando Antoneli
Push-forward method for piecewise deterministic biochemical simulations. Theor. Comput. Sci. 893: 17-40 (2021) - [c16]Marion Buffard, Aurélien Desoeuvres
LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales. CMSB 2021: 238-244 - 2020
- [j20]Russell J. Bradford
Identifying the parametric occurrence of multiple steady states for some biological networks. J. Symb. Comput. 98: 84-119 (2020) - [c15]Ovidiu Radulescu
Tropical Geometry of Biological Systems (Invited Talk). CASC 2020: 1-13 - [c14]Hamid Rahkooy, Ovidiu Radulescu
A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks. CASC 2020: 492-509 - [c13]Aurélien Desoeuvres
Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity. CMSB 2020: 79-101 - [i4]Niclas Kruff, Christoph Lüders, Ovidiu Radulescu
Algorithmic Reduction of Biological Networks With Multiple Time Scales. CoRR abs/2010.10129 (2020)
2010 – 2019
- 2019
- [j19]Kenneth Barr
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness. PLoS Comput. Biol. 15(11) (2019) - [c12]Guilherme C. P. Innocentini
Effective Computational Methods for Hybrid Stochastic Gene Networks. CMSB 2019: 60-77 - [p1]Satya Swarup Samal, Jeyashree Krishnan, Ali Hadizadeh Esfahani, Christoph Lüders, Andreas Weber, Ovidiu Radulescu
Metastable Regimes and Tipping Points of Biochemical Networks with Potential Applications in Precision Medicine. Automated Reasoning for Systems Biology and Medicine 2019: 269-295 - [i3]Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu
Identifying the Parametric Occurrence of Multiple Steady States for some Biological Networks. CoRR abs/1902.04882 (2019) - 2018
- [j18]François Boulier, François Fages, Ovidiu Radulescu
The SYMBIONT project: symbolic methods for biological networks. ACM Commun. Comput. Algebra 52(3): 67-70 (2018) - 2017
- [j17]Satya Swarup Samal
Linking metabolic network features to phenotypes using sparse group lasso. Bioinform. 33(21): 3445-3453 (2017) - [j16]Eun-Jin Kim
Far-From-Equilibrium Time Evolution between Two Gamma Distributions. Entropy 19(10): 511 (2017) - [j15]Aurélien Naldi
Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells. PLoS Comput. Biol. 13(3) (2017) - [j14]Sergei Vakulenko, Ovidiu Radulescu
Centralized Networks to Generate Human Body Motions. Sensors 17(12): 2907 (2017) - [c11]Matthew England
Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks. CASC 2017: 93-108 - [c10]Russell J. Bradford
A Case Study on the Parametric Occurrence of Multiple Steady States. ISSAC 2017: 45-52 - [i2]Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber:
A Case Study on the Parametric Occurrence of Multiple Steady States. CoRR abs/1704.08997 (2017) - [i1]Matthew England, Hassan Errami, Dima Grigoriev, Ovidiu Radulescu, Thomas Sturm, Andreas Weber:
Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks. CoRR abs/1706.08794 (2017) - 2016
- [j13]Satya Swarup Samal
Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors. Biosyst. 149: 3-14 (2016) - [c9]Jasha Sommer-Simpson, John Reinitz, Leonid Fridlyand
Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry. CMSB 2016: 273-288 - 2015
- [c8]Satya Swarup Samal, Dima Grigoriev, Holger Fröhlich
Analysis of Reaction Network Systems Using Tropical Geometry. CASC 2015: 424-439 - [c7]Ovidiu Radulescu, Satya Swarup Samal, Aurélien Naldi
Symbolic Dynamics of Biochemical Pathways as Finite States Machines. CMSB 2015: 104-120 - 2014
- [j12]Sylvain Soliman
A constraint solving approach to model reduction by tropical equilibration. Algorithms Mol. Biol. 9: 24 (2014) - 2013
- [j11]Partho Sen
Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways. BMC Syst. Biol. 7: 123 (2013) - [c6]Vincent Noël
A hybrid mammalian cell cycle model. HSB 2013: 68-83 - 2012
- [j10]Sergei Vakulenko, Ovidiu Radulescu
Flexible and Robust Patterning by Centralized Gene Networks. Fundam. Informaticae 118(4): 345-369 (2012) - [j9]Sergei Vakulenko, Ovidiu Radulescu
Flexible and Robust Networks. J. Bioinform. Comput. Biol. 10(2) (2012) - [c5]Vincent Noel
Hybrid models of the cell cycle molecular machinery. HSB 2012: 88-105 - 2011
- [j8]Carito Guziolowski
Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1223-1234 (2011) - [j7]Ovidiu Radulescu
Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities. Trans. Comp. Sys. Biology 13: 110-130 (2011) - [c4]Vincent Noel
Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation. WABI 2011: 225-236 - [c3]Vincent Noel
Tropical Geometries and Dynamics of Biochemical Networks Application to Hybrid Cell Cycle Models. SASB 2011: 75-91 - 2010
- [j6]Tatiana Baumuratova
Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network. BMC Syst. Biol. 4: 146 (2010)
2000 – 2009
- 2009
- [j5]Alina Crudu, Arnaud Debussche, Ovidiu Radulescu
Hybrid stochastic simplifications for multiscale gene networks. BMC Syst. Biol. 3: 89 (2009) - [j4]Manu, Svetlana Surkova
Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors. PLoS Comput. Biol. 5(3) (2009) - [c2]Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Yu. Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu
Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks. AIAI Workshops 2009: 72-87 - 2008
- [j3]Philippe Veber, Carito Guziolowski
Inferring the role of transcription factors in regulatory networks. BMC Bioinform. 9 (2008) - [j2]Ovidiu Radulescu
Robust simplifications of multiscale biochemical networks. BMC Syst. Biol. 2: 86 (2008) - [c1]Carito Guziolowski
Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets. CIBB 2008: 144-155 - 2007
- [j1]Ovidiu Radulescu
Théorèmes limites pour les processus de Markov à sauts. Tech. Sci. Informatiques 26(3-4): 443-469 (2007)
Coauthor Index
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