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2020 – today

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2024
[j17]
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  - journals/tcbb/HuHCLPCT24
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Zhao-Qi Hu, Yuan-Mao Hung, Li-Han Chen, Liang-Chuan Lai, Min-Hsiung Pan, Eric Y. Chuang, Mong-Hsun Tsai:
NURECON: A Novel Online System for Determining Nutrition Requirements Based on Microbial Composition. IEEE ACM Trans. Comput. Biol. Bioinform. 21(2): 254-264 (2024)
2023
[j16]
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  - journals/jbi/ChattopadhyayLS23
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Amrita Chattopadhyay, Chien-Yueh Lee, Ying-Cheng Shen, Kuan-Chen Lu, Tzu-Hung Hsiao, Ching-Heng Lin, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data. J. Biomed. Informatics 143: 104423 (2023)
2022
[j15]
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  - journals/cbm/HungLTLLTC22
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Yuan-Mao Hung, Wei-Ni Lyu, Ming-Lin Tsai, Chiang-Lin Liu, Liang-Chuan Lai, Mong-Hsun Tsai, Eric Y. Chuang:
To compare the performance of prokaryotic taxonomy classifiers using curated 16S full-length rRNA sequences. Comput. Biol. Medicine 145: 105416 (2022)
[j14]
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  - journals/fbinf/HsiehHTLC22
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Yu-Peng Hsieh, Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang:
16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences. Frontiers Bioinform. 2 (2022)
2021
[j13]
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  - journals/access/HungTLC21
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Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang:
ATTRACTIVE - An Auto-Updating Database for Experimental Protocols in Regenerative Medicine. IEEE Access 9: 75202-75210 (2021)
[j12]
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  - journals/bib/PhanCLYLLHTC21
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Nam Nhut Phan, Amrita Chattopadhyay, Tsui-Ting Lee, Hsiang-I Yin, Tzu-Pin Lu, Liang-Chuan Lai, Hsiao-Lin Hwa, Mong-Hsun Tsai, Eric Y. Chuang:
High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data. Briefings Bioinform. 22(6) (2021)
[j11]
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  - journals/biodb/ChattopadhyayTW21
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Amrita Chattopadhyay, Zi Han Teoh, Chi-Yun Wu, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Chia-Hsin Wu, Tzu-Pin Lu, Eric Y. Chuang:
CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer. Database J. Biol. Databases Curation 2021 (2021)
[j10]
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  - journals/tcbb/ChaoHLLLTLC21
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Kuan-Hao Chao, Yi-Wen Hsiao, Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow. IEEE ACM Trans. Comput. Biol. Bioinform. 18(5): 2023-2031 (2021)

2010 – 2019

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2019
[j9]
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  - journals/biodb/LeeCCJLTLC19
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Chien-Yueh Lee, Amrita Chattopadhyay, Li-Mei Chiang, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases. Database J. Biol. Databases Curation 2019: baz075 (2019)
[j8]
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  - journals/bmcbi/WangLLTLC19
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Ti-Tai Wang, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
anamiR: integrated analysis of MicroRNA and gene expression profiling. BMC Bioinform. 20(1): 239:1-239:7 (2019)
2018
[j7]
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  - journals/biodb/LeeLLTLC18
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Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system. Database J. Biol. Databases Curation 2018: bax101 (2018)
2017
[j6]
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  - journals/bmcbi/LaiWWLTLC17
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Yi-Pin Lai, Liang-Bo Wang, Wei-An Wang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
iGC - an integrated analysis package of gene expression and copy number alteration. BMC Bioinform. 18(1): 35:1-35:9 (2017)
2013
[j5]
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  - journals/bioinformatics/ChuHCYTLLLCTK13
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Hsueh-Ting Chu, William W. L. Hsiao, Jen-Chih Chen, Tze-Jung Yeh, Mong-Hsun Tsai, Han Lin, Yen-Wenn Liu, Sheng-An Lee, Chaur-Chin Chen, Theresa Tsao, Cheng-Yan Kao:
EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection. Bioinform. 29(8): 1004-1010 (2013)
[j4]
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  - journals/ijdmb/ChenLCLTHC13
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Pei-Chun Chen, Tzu-Pin Lu, Jung-Chih Chang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Eric Y. Chuang:
Concurrent analysis of copy number variation and gene expression: application in paired non-smoking female lung cancer patients. Int. J. Data Min. Bioinform. 8(1): 92-104 (2013)
2011
[j3]
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  - journals/jcb/KuoLCCLTC11
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Hsien-Chi Kuo, Po-Yu Lin, Ting-Chiun Chung, Chin-Mei Chao, Liang-Chuan Lai, Mong-Hsun Tsai, Eric Y. Chuang:
DBCAT: Database of CpG Islands and Analytical Tools for Identifying Comprehensive Methylation Profiles in Cancer Cells. J. Comput. Biol. 18(8): 1013-1017 (2011)
2010
[c4]
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  - conf/bibm/LuCHTLC10
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Jo-Yang Lu, Eric Y. Chuang, Chuhsing Kate Hsiao, Mong-Hsun Tsai, Liang-Chuan Lai, Pei-Chun Chen:
Utilizing Cox regression model to assess the relations between predefined gene sets and the survival outcome of lung adenocarcinoma. BIBM 2010: 218-221
[c3]
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  - conf/bibm/LuLHCTC10
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Tzu-Pin Lu, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Eric Y. Chuang:
Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinoma. BIBM 2010: 284-289
[c2]
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  - conf/bibm/ChenLHCTKCC10
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Lee H. Chen, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Wen-Hung Kuo, King-Jen Chang, Eric Y. Chuang:
Comparison of triple negative breast cancer between Asian and western data sets. BIBM Workshops 2010: 489-493
[c1]
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  - conf/bibm/ChangLCLTHC10
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Jung-Chih Chang, Tzu-Pin Lu, Eric Y. Chuang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Pei-Chun Chen:
Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patients. BIBM 2010: 599-602

2000 – 2009

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2008
[j2]
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  - journals/bioinformatics/ChenHJTYMCC08
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Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen:
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. Bioinform. 24(16): 1749-1756 (2008)
[j1]
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  - journals/bioinformatics/ChenHJTYMCC08a
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Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen:
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. Bioinform. 24(19): 2276 (2008)

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