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Mario Stanke
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2020 – today
- 2023
- [j25]Tomás Bruna
, Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Mario Stanke, Natalia Nenasheva, Matthis Ebel
Galba: genome annotation with miniprot and AUGUSTUS. BMC Bioinform. 24(1): 327 (2023) - 2022
- [j24]Darvin Mertsch, Mario Stanke
End-to-end learning of evolutionary models to find coding regions in genome alignments. Bioinform. 38(7): 1857-1862 (2022) - [j23]Matthis Ebel
Global, highly specific and fast filtering of alignment seeds. BMC Bioinform. 23(1): 225 (2022) - [c2]Johanna Lange
Co-evolution of Spies and Resistance Fighters. EvoApplications 2022: 487-502 - 2021
- [j22]Lars Gabriel, Katharina Jasmin Hoff
TSEBRA: transcript selector for BRAKER. BMC Bioinform. 22(1): 566 (2021)
2010 – 2019
- 2019
- [j21]Mario Stanke
VARUS: sampling complementary RNA reads from the sequence read archive. BMC Bioinform. 20(1): 558:1-558:7 (2019) - 2016
- [j20]Katharina Jasmin Hoff
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS. Bioinform. 32(5): 767-769 (2016) - [j19]Stefanie König, Lars Romoth, Lizzy Gerischer, Mario Stanke:
Simultaneous gene finding in multiple genomes. Bioinform. 32(22): 3388-3395 (2016) - 2015
- [i1]Stefanie König, Lars Romoth, Lizzy Gerischer, Mario Stanke:
Simultaneous gene finding in multiple genomes. PeerJ Prepr. 3: e1296 (2015) - 2014
- [j18]Zhijie Dong, Keyu Wang, Truong Khanh Linh Dang, Mehmet Gültas
CRF-based models of protein surfaces improve protein-protein interaction site predictions. BMC Bioinform. 15: 277 (2014) - 2013
- [j17]Katharina Jasmin Hoff
WebAUGUSTUS - a web service for training AUGUSTUS and predicting genes in eukaryotes. Nucleic Acids Res. 41(Webserver-Issue): 123-128 (2013) - 2012
- [j16]Anne-Kathrin Schultz
jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus. Nucleic Acids Res. 40(Web-Server-Issue): 193-198 (2012) - 2011
- [j15]Oliver Keller, Martin Kollmar
A novel hybrid gene prediction method employing protein multiple sequence alignments. Bioinform. 27(6): 757-763 (2011) - [j14]Thomas Unterthiner
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown. BMC Bioinform. 12: 93 (2011) - 2010
- [j13]Ingo Bulla, Anne-Kathrin Schultz
HIV classification using the coalescent theory. Bioinform. 26(11): 1409-1415 (2010)
2000 – 2009
- 2009
- [j12]Dietmar Sommerfeld, Thomas Lingner, Mario Stanke, Burkhard Morgenstern, Harald Richter:
AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis. Future Gener. Comput. Syst. 25(3): 337-345 (2009) - [j11]Anne-Kathrin Schultz
jpHMM: Improving the reliability of recombination prediction in HIV-1. Nucleic Acids Res. 37(Web-Server-Issue): 647-651 (2009) - 2008
- [j10]Mario Stanke, Mark Diekhans
Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinform. 24(5): 637-644 (2008) - [j9]Oliver Keller, Florian Odronitz, Mario Stanke, Martin Kollmar
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. BMC Bioinform. 9 (2008) - [j8]Donna Karolchik, Robert M. Kuhn, Robert Baertsch
The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res. 36(Database-Issue): 773-779 (2008) - 2007
- [j7]Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel
The UCSC genome browser database: update 2007. Nucleic Acids Res. 35(Database-Issue): 668-673 (2007) - 2006
- [j6]Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinform. 7: 62 (2006) - [j5]Anne-Kathrin Schultz
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. BMC Bioinform. 7: 265 (2006) - [j4]Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern:
AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Res. 34(Web-Server-Issue): 435-439 (2006) - [j3]Ming Zhang, Anne-Kathrin Schultz
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Res. 34(Web-Server-Issue): 463-465 (2006) - 2005
- [j2]Mario Stanke, Burkhard Morgenstern:
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res. 33(Web-Server-Issue): 465-467 (2005) - 2004
- [b1]Mario Stanke:
Gene prediction with a hidden Markov model. University of Göttingen, 2004 - [j1]Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern:
AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res. 32(Web-Server-Issue): 309-312 (2004) - 2003
- [c1]Mario Stanke, Stephan Waack:
Gene prediction with a hidden Markov model and a new intron submodel. ECCB 2003: 215-225
Coauthor Index
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