More Web Proxy on the site http://driver.im/

default search action

combined dblp search
author search
venue search
publication search

ask others

Xiaole Shirley Liu

X. Shirley Liu

> Home > Persons

Person information

affiliation: Dana Farber Harvard Cancer Center, Boston, USA

Refine list

refinements active!

zoomed in on ?? of ?? records

view refined list in

export refined list as

showing all ?? records

2020 – today

see FAQ

What is the meaning of the colors in the publication lists?

2022
[j31]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/gpb/ZhangBCDCSZZGZLFTL22
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/gpb/ZhangBCDCSZZGZLFTL22
Wubing Zhang, Shourya S. Roy Burman, Jiaye Chen, Katherine A. Donovan, Yang Cao, Chelsea Shu, Boning Zhang, Zexian Zeng, Shengqing Gu, Yi Zhang, Dian Li, Eric S. Fischer, Collin Tokheim, X. Shirley Liu:
Machine Learning Modeling of Protein-intrinsic Features Predicts Tractability of Targeted Protein Degradation. Genom. Proteom. Bioinform. 20(5): 882-898 (2022)
[j30]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/ZengWYOLZGZLWFZ22
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/ZengWYOLZGZLWFZ22
Zexian Zeng, Cheryl J. Wong, Lin Yang, Nofal Ouardaoui, Dian Li, Wubing Zhang, Shengqing Gu, Yi Zhang, Yang Liu, Xiaoqing Wang, Jingxin Fu, Liye Zhou, Boning Zhang, Sarah Kim, Kathleen B. Yates, Myles Brown, Gordon J. Freeman, Ravindra Uppaluri, Robert Manguso, X. Shirley Liu:
TISMO: syngeneic mouse tumor database to model tumor immunity and immunotherapy response. Nucleic Acids Res. 50(D1): 1391-1397 (2022)
2021
[j29]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/gpb/QiuFFXKTPGLCZJB21
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/gpb/QiuFFXKTPGLCZJB21
Xintao Qiu, Avery S. Feit, Ariel Feiglin, Yingtian Xie, Nikolas Kesten, Len Taing, Joseph Perkins, Shengqing Gu, Yihao Li, Paloma Cejas, Ningxuan Zhou, Rinath Jeselsohn, Myles Brown, X. Shirley Liu, Henry W. Long:
CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis. Genom. Proteom. Bioinform. 19(4): 652-661 (2021)
[j28]
- view
  authority control:
- export record
  dblp key:
  - journals/natmi/ZhangLL21
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/natmi/ZhangLL21
Yi Zhang, Yang Liu, X. Shirley Liu:
Neural network architecture search with AMBER. Nat. Mach. Intell. 3(5): 372-373 (2021)
2020
[j27]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/gpb/LiWGJSCHSWTLLWB20
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/gpb/LiWGJSCHSWTLLWB20
Ziyi Li, Binbin Wang, Shengqing Gu, Peng Jiang, Avinash Das Sahu, Chen-Hao Chen, Tong Han, Sailing Shi, Xiaoqing Wang, Nicole Traugh, Hailing Liu, Yin Liu, Qiu Wu, Myles Brown, Tengfei Xiao, Genevieve M. Boland, Xiaole Shirley Liu:
CRISPR Screens Identify Essential Cell Growth Mediators in BRAF Inhibitor-resistant Melanoma. Genom. Proteom. Bioinform. 18(1): 26-40 (2020)
[j26]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/LiFZCLCLL20
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/LiFZCLCLL20
Taiwen Li, Jingxin Fu, Zexian Zeng, David Cohen, Jing Li, Qianming Chen, Bo Li, Xiaole Shirley Liu:
TIMER2.0 for analysis of tumor-infiltrating immune cells. Nucleic Acids Res. 48(Webserver-Issue): W509-W514 (2020)

2010 – 2019

see FAQ

What is the meaning of the colors in the publication lists?

2019
[j25]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/KosterBL19
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/KosterBL19
Johannes Köster, Myles Brown, Xiaole Shirley Liu:
A Bayesian model for single cell transcript expression analysis on MERFISH data. Bioinform. 35(6): 995-1001 (2019)
[j24]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/KosterBL19a
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/KosterBL19a
Johannes Köster, Myles Brown, Xiaole Shirley Liu:
A Bayesian model for single cell transcript expression analysis on MERFISH data. Bioinform. 35(13): 2347 (2019)
[j23]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/ZhengWMQWSCBZML19
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/ZhengWMQWSCBZML19
Rongbin Zheng, Changxin Wan, Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown, Xiaoyan Zhang, Clifford A. Meyer, Xiaole Shirley Liu:
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis. Nucleic Acids Res. 47(Database-Issue): D729-D735 (2019)
[j22]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/LiWZFDML19
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/LiWZFDML19
Shaojuan Li, Changxin Wan, Rongbin Zheng, Jingyu Fan, Xin Dong, Clifford A. Meyer, Xiaole Shirley Liu:
Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks. Nucleic Acids Res. 47(Webserver-Issue): W206-W211 (2019)
2018
[j21]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/ChenXXJMLBL18
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/ChenXXJMLBL18
Chen-Hao Chen, Tengfei Xiao, Han Xu, Peng Jiang, Clifford A. Meyer, Wei Li, Myles Brown, Xiaole Shirley Liu:
Improved design and analysis of CRISPR knockout screens. Bioinform. 34(23): 4095-4101 (2018)
[j20]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/bmcbi/CornwellVTHKLSL18
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bmcbi/CornwellVTHKLSL18
MacIntosh Cornwell, Mahesh Vangala, Len Taing, Zachary Herbert, Johannes Köster, Bo Li, Hanfei Sun, Taiwen Li, Jian Zhang, Xintao Qiu, Matthew Pun, Rinath Jeselsohn, Myles Brown, Xiaole Shirley Liu, Henry W. Long:
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis. BMC Bioinform. 19(1): 135:1-135:14 (2018)
2017
[j19]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/MeiQWSZZZWSTLBM17
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/MeiQWSZZZWSTLBM17
Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Rongbin Zheng, Chongzhi Zang, Muyuan Zhu, Jiaxin Wu, Xiaohui Shi, Len Taing, Tao Liu, Myles Brown, Clifford A. Meyer, Xiaole Shirley Liu:
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse. Nucleic Acids Res. 45(Database-Issue): D658-D662 (2017)
2016
[j18]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/MaKQHLCCWMLXL16
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/MaKQHLCCWMLXL16
Jian Ma, Johannes Köster, Qian Qin, Shengen Hu, Wei Li, Chenhao Chen, Qingyi Cao, Jinzeng Wang, Shenglin Mei, Qi Liu, Han Xu, Xiaole Shirley Liu:
CRISPR-DO for genome-wide CRISPR design and optimization. Bioinform. 32(21): 3336-3338 (2016)
2015
[j17]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/ploscb/ZhangWFWZL15
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/ploscb/ZhangWFWZL15
Naiqian Zhang, Haiyun Wang, Yun Fang, Jun Wang, Xiaoqi Zheng, Xiaole Shirley Liu:
Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model. PLoS Comput. Biol. 11(9) (2015)
2014
[j16]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/WangHSLWWQMZYLZ14
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/WangHSLWWQMZYLZ14
Qixuan Wang, Jinyan Huang, Hanfei Sun, Jing Liu, Juan Wang, Qian Wang, Qian Qin, Shenglin Mei, Chengchen Zhao, Xiaoqin Yang, Xiaole Shirley Liu, Yong Zhang:
CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse. Nucleic Acids Res. 42(Database-Issue): 450-458 (2014)
[j15]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nature/HoJLALISMTAPGKR14
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nature/HoJLALISMTAPGKR14
Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park:
Comparative analysis of metazoan chromatin organization Open. Nat. 512(7515): 449-452 (2014)
[j14]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/quanbio/SunYWL14
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/quanbio/SunYWL14
Mengyi Sun, Bingyu Yan, Chengkun Wu, Xiaole Shirley Liu:
Meeting report on YBPW 2014 (the 3rd Young Bioinformatics PIs Workshop). Quant. Biol. 2(2): 80-84 (2014)
2013
[j13]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/SunQLWLWLYTRBZLL13
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/SunQLWLWLYTRBZLL13
Hanfei Sun, Bo Qin, Tao Liu, Qixuan Wang, Jing Liu, Juan Wang, Xueqiu Lin, Yulin Yang, Len Taing, Prakash K. Rao, Myles Brown, Yong Zhang, Henry Long, Xiaole Shirley Liu:
CistromeFinder for ChIP-seq and DNase-seq data reuse. Bioinform. 29(10): 1352-1354 (2013)
[j12]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/quanbio/ShinLDZL13
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/quanbio/ShinLDZL13
Hyunjin Shin, Tao Liu, Xikun Duan, Yong Zhang, Xiaole Shirley Liu:
Computational methodology for ChIP-seq analysis. Quant. Biol. 1(1): 54-70 (2013)
2012
[j11]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/QinZGTLWWCSDHLLZL12
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/QinZGTLWWCSDHLLZL12
Bo Qin, Meng Zhou, Ying Ge, Len Taing, Tao Liu, Qian Wang, Su Wang, Junsheng Chen, Lingling Shen, Xikun Duan, Sheng'en Hu, Wei Li, Henry Long, Yong Zhang, Xiaole Shirley Liu:
CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human. Bioinform. 28(10): 1411-1412 (2012)
[j10]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/FuTFLZ12
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/FuTFLZ12
Kai Fu, Qianzi Tang, Jianxing Feng, Xiaole Shirley Liu, Yong Zhang:
DiNuP: a systematic approach to identify regions of differential nucleosome positioning. Bioinform. 28(15): 1965-1971 (2012)
[j9]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/FengMWLLZ12
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/FengMWLLZ12
Jianxing Feng, Clifford A. Meyer, Qian Wang, Jun S. Liu, Xiaole Shirley Liu, Yong Zhang:
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data. Bioinform. 28(21): 2782-2788 (2012)
2011
[j8]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/MeyerHBL11
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/MeyerHBL11
Clifford A. Meyer, Housheng H. He, Myles Brown, Xiaole Shirley Liu:
BINOCh: binding inference from nucleosome occupancy changes. Bioinform. 27(13): 1867-1868 (2011)
[j7]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/CaoZWMZCLL11
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/CaoZWMZCLL11
Qingyi Cao, Meng Zhou, Xujun Wang, Clifford A. Meyer, Yong Zhang, Zhi Chen, Cheng Li, Xiaole Shirley Liu:
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data. Nucleic Acids Res. 39(Database-Issue): 968-974 (2011)

2000 – 2009

see FAQ

What is the meaning of the colors in the publication lists?

2009
[j6]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/ShinLML09
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/ShinLML09
Hyunjin Shin, Tao Liu, Arjun K. Manrai, Xiaole Shirley Liu:
CEAS: cis-regulatory element annotation system. Bioinform. 25(19): 2605-2606 (2009)
2007
[j5]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/SongMLFQL07
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/SongMLFQL07
Jun S. Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, Xiaole Shirley Liu:
Microarray blob-defect removal improves array analysis. Bioinform. 23(8): 966-971 (2007)
[j4]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/ploscb/Liu07
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/ploscb/Liu07
Xiaole Shirley Liu:
Getting Started in Tiling Microarray Analysis. PLoS Comput. Biol. 3(10) (2007)
[c2]
- no documents available
  - no references & citations available
- export record
  dblp key:
  - conf/biocomp/LiCBL07
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/biocomp/LiCBL07
Wei Li, Jason S. Carroll, Myles Brown, Xiaole Shirley Liu:
xMAN: extreme MApping of oligoNucleotides. BIOCOMP 2007: 631-637
2006
[j3]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/JiLSWL06
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/JiLSWL06
Xuwo Ji, Wei Li, Jun Song, Liping Wei, Xiaole Shirley Liu:
CEAS: cis-regulatory element annotation system. Nucleic Acids Res. 34(Web-Server-Issue): 551-554 (2006)
2005
[j2]
- view
  authority control:
- export record
  dblp key:
  - journals/bioinformatics/HongLZLLW05
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/bioinformatics/HongLZLLW05
Pengyu Hong, Xiaole Shirley Liu, Qing Zhou, Xin Lu, Jun S. Liu, Wing Hung Wong:
A boosting approach for motif modeling using ChIP-chip data. Bioinform. 21(11): 2636-2643 (2005)
[c1]
- view
  authority control:
- export record
  dblp key:
  - conf/ismb/LiML05
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/conf/ismb/LiML05
Wei Li, Clifford A. Meyer, Xiaole Shirley Liu:
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. ISMB (Supplement of Bioinformatics) 2005: 274-282
2004
[j1]
- view
  - electronic edition via DOI (open access)
  - references & citations
  authority control:
- export record
  dblp key:
  - journals/nar/LiuWBBLL04
- ask others
- share record
  persistent URL:
  - https://dblp.org/rec/journals/nar/LiuWBBLL04
Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, Xiaole Shirley Liu:
A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Res. 32(Web-Server-Issue): 204-207 (2004)

Coauthor Index

see FAQ

manage site settings

To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.