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Luke V. Rasmussen
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2020 – today
- 2024
- [j28]Kyle Nolla
, Luke V. Rasmussen
Seamless Integration of Computer-Adaptive Patient Reported Outcomes into an Electronic Health Record. Appl. Clin. Inform. 15(1): 145-154 (2024) - 2023
- [j27]Pascal S. Brandt
Characterizing variability of electronic health record-driven phenotype definitions. J. Am. Medical Informatics Assoc. 30(3): 427-437 (2023) - [j26]Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Li Shen, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo:
AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease. J. Biomed. Informatics 144: 104442 (2023) - 2022
- [j25]Pascal S. Brandt
Design and validation of a FHIR-based EHR-driven phenotyping toolbox. J. Am. Medical Informatics Assoc. 29(9): 1449-1460 (2022) - [j24]Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen:
Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. BMC Medical Informatics Decis. Mak. 22(1): 23 (2022) - [i6]Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo:
AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease. CoRR abs/2212.06042 (2022) - 2021
- [j23]Luke V. Rasmussen, John J. Connolly
Infobuttons for Genomic Medicine: Requirements and Barriers. Appl. Clin. Inform. 12(02): 383-390 (2021) - [j22]Mullai Murugan
Genomic considerations for FHIR®; eMERGE implementation lessons. J. Biomed. Informatics 118: 103795 (2021) - [c45]Prakash Adekkanattu, Jennifer A. Pacheco, Joseph Kabariti, Daniel J. Stone, Yue Yu, Parag Goyal, Faraz S. Ahmad, Guoqian Jiang, Yuan Luo, Luke V. Rasmussen, Pascal S. Brandt, Zhenxing Xu, Jie Xu, Fei Wang, Natalie C. Benda, Thomas R. Campion Jr., Jyotishman Pathak:
Multi-site Evaluation of Longitudinal Changes in Ejection Fraction in Heart Failure Patients Through Data-driven Phenotyping. AMIA 2021 - [c44]Natalie C. Benda, Pascal S. Brandt, Jessica S. Ancker, Jennifer A. Pacheco, Prakash Adekkanattu, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen:
Supporting EHR-based Cohort Discovery Through User-centered Design: Results of an Early Formative Usability Study. AMIA 2021 - [c43]Rebecca T. Levinson, Jennifer R. Malinowski, Luke V. Rasmussen, Suzette J. Bielinski, Véronique L. Roger, Quinn Stanton Wells, Laura K. Wiley:
Impact of Sex and Gender Disparities on Computational Phenotyping: A Potential Barrier to an Equitable Learning Health System. AMIA 2021 - [c42]Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Fei Wang, Richard Isaacson, Jyotishman Pathak, Yuan Luo:
A Deep Learning Framework Using a Pre-trained BERT Model to Predict the Risk of Progression from Mild Cognitive Impairment to Alzheimer's Disease. AMIA 2021 - [c41]Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei:
Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. AMIA 2021 - [c40]Daniel J. Stone, Sijia Liu, Yuan Luo, Andrew Wen, Nansu Zong, Luke V. Rasmussen, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Fei Wang, Cui Tao, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang:
FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR. AMIA 2021 - [c39]Andrew Wen, Luke V. Rasmussen, Daniel J. Stone, Sijia Liu, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Yuan Luo, Fei Wang, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang:
On Constraints and Considerations for Extending Support for Natural Language Processing-Based FHIR Resource Generation. AMIA 2021 - 2020
- [j21]Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo
Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks. J. Biomed. Informatics 102: 103361 (2020) - [c38]Pascal S. Brandt, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Faraz S. Ahmad, Jie Xu, Zhenxing Xu, Jessica S. Ancker, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen:
Feasibility of Cross-Platform EHR-Driven Phenotyping Using Clinical Quality Language. AMIA 2020 - [c37]Jie Xu, Fei Wang, Zhenxing Xu, Prakash Adekkanattu, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Yuan Luo, Chengsheng Mao, Jennifer A. Pacheco, Luke V. Rasmussen, Yiye Zhang, Richard Isaacson, Jyotishman Pathak:
Identification of Alzheimer's Disease Subtypes from Electronic Health Records Using a Data-Driven Approach. AMIA 2020 - [i5]Timothy M. Herr, Therese A. Nelson, Luke V. Rasmussen, Yinan Zheng, Nicola Lancki, Justin B. Starren:
Design Principles Developed through User-Centered and Socio-Technical Methods Improve Clinician Satisfaction, Speed, and Confidence in Pharmacogenomic Clinical Decision Support. CoRR abs/2002.00047 (2020)
2010 – 2019
- 2019
- [j20]Timothy M. Herr, Josh F. Peterson
Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network. J. Am. Medical Informatics Assoc. 26(2): 143-148 (2019) - [j19]Luke V. Rasmussen
An ancillary genomics system to support the return of pharmacogenomic results. J. Am. Medical Informatics Assoc. 26(4): 306-310 (2019) - [j18]George Hripcsak, Ning Shang, Peggy L. Peissig, Luke V. Rasmussen
Facilitating phenotype transfer using a common data model. J. Biomed. Informatics 96 (2019) - [j17]Na Hong, Andrew Wen, Daniel J. Stone, Shintaro Tsuji, Paul R. Kingsbury, Luke V. Rasmussen
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. J. Biomed. Informatics 99 (2019) - [j16]Ning Shang
Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics 99 (2019) - [j15]Himanshu Sharma
Developing a portable natural language processing based phenotyping system. BMC Medical Informatics Decis. Mak. 19-S(3): 79-87 (2019) - [c36]Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak:
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. AMIA 2019 - [c35]Paul R. Dexter, Henry H. Ong, Amanda Elsey, Gillian Bell, Nephi Walton, Wendy K. Chung, Luke V. Rasmussen, J. Kevin Hicks, Aniwaa Owusu-obeng, Stuart A. Scott, Stephen B. Ellis, Josh F. Peterson:
Development of a Genomic Data Flow Framework: Results of a Survey Administered to NIH-NHGRI IGNITE and eMERGE Consortia Participants. AMIA 2019 - [c34]Luke V. Rasmussen, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Jessica S. Ancker, Fei Wang, Zhenxing Xu, Jyotishman Pathak, Yuan Luo:
Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms. AMIA 2019 - [c33]Zhenxing Xu, Yuan Luo
Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care. MedInfo 2019: 462-466 - [i4]Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang:
Identification of Predictive Sub-Phenotypes of Acute Kidney Injury using Structured and Unstructured Electronic Health Record Data with Memory Networks. CoRR abs/1904.04990 (2019) - [i3]Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak:
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. CoRR abs/1905.01961 (2019) - 2018
- [j14]Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. 25(10): 1375-1381 (2018) - [j13]Jennifer A. Pacheco
A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. J. Am. Medical Informatics Assoc. 25(11): 1540-1546 (2018) - [c32]Yizhen Zhong, Luke V. Rasmussen
Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. BIBM 2018: 1143-1146 - [c31]Himanshu Sharma
Portable Phenotyping System: A Portable Machine-Learning Approach to i2b2 Obesity Challenge. ICHI Workshops 2018: 86-87 - [i2]Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke V. Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo:
Developing a Portable Natural Language Processing Based Phenotyping System. CoRR abs/1807.06638 (2018) - [i1]Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo:
Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. CoRR abs/1811.06183 (2018) - 2017
- [c30]Pauline Kenly, Luke V. Rasmussen, Andrew Schriever, Faraz S. Ahmad, Kathryn L. Jackson, Richard Chagnon, Theresa L. Walunas, Abel N. Kho:
Challenges impacting data collection from Electronic Health Record (EHR) Systems in Small and Medium sized practices in the Midwest. AMIA 2017 - [c29]Richard C. Kiefer, Luke V. Rasmussen, Jennifer A. Pacheco, Peter Speltz, Joshua C. Denny, William K. Thompson, Jyotishman Pathak, Guoqian Jiang:
Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository. AMIA 2017 - [c28]Luke V. Rasmussen, Darren C. Ames, Samuel J. Aronson, Lawrence J. Babb, Casey L. Overby:
Design and Implementation of a Structured Sequencing Report Format: A Multi-Stakeholder Perspective from eMERGE. AMIA 2017 - [c27]Luke V. Rasmussen, Casey L. Overby:
DocUBuild: A Collaborative System to Enhance Dissemination and Discovery of Genomic Clinical Content. AMIA 2017 - [c26]Luke V. Rasmussen, Andrew Schriever, Pauline Kenly, Dejan Jovanov, Stephen D. Persell, Theresa L. Walunas, Abel N. Kho:
Use of the popHealth Open-Source Quality Measure Engine to Support Cardiovascular Care at Small- and Medium-Sized Practices. AMIA 2017 - [c25]Peter Speltz, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, William K. Thompson, Guoqian Jiang, Jyotishman Pathak, Joshua C. Denny:
The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs. AMIA 2017 - [c24]Amy Y. Wang, William J. Lancaster, Matthew C. Wyatt, Luke V. Rasmussen, Daniel Fort, James J. Cimino:
Classifying Clinical Trial Eligibility Criteria to Facilitate Phased Cohort Identification Using Clinical Data Repositories. AMIA 2017 - 2016
- [j12]Casey L. Overby
Practical considerations for implementing genomic information resources. Appl. Clin. Inform. 07(03): 870-882 (2016) - [j11]Gregory William Hruby, Luke V. Rasmussen
A multi-site cognitive task analysis for biomedical query mediation. Int. J. Medical Informatics 93: 74-84 (2016) - [j10]Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. J. Am. Medical Informatics Assoc. 23(6): 1046-1052 (2016) - [j9]Raymond Heatherly, Luke V. Rasmussen
A multi-institution evaluation of clinical profile anonymization. J. Am. Medical Informatics Assoc. 23(e1): e131-e137 (2016) - [j8]Ayesha Aziz, Kensaku Kawamoto, Karen Eilbeck, Marc S. Williams, Robert R. Freimuth
The genomic CDS sandbox: An assessment among domain experts. J. Biomed. Informatics 60: 84-94 (2016) - [j7]Guoqian Jiang, Richard C. Kiefer, Luke V. Rasmussen
Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. J. Biomed. Informatics 62: 232-242 (2016) - [c23]Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo:
Implementing Pharmacogenomic Clinical Decision Support: Design and Prescriber Response in the eMERGE Network. AMIA 2016 - [c22]Guoqian Jiang, William K. Thompson, Luke V. Rasmussen, Richard C. Kiefer, Jennifer A. Pacheco, Huan Mo, Peter Speltz, Joshua C. Denny, Jyotishman Pathak:
An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution. AMIA 2016 - [c21]Luke V. Rasmussen, Maureen E. Smith, Federico Almaraz, Stephen D. Persell, Laura Rasmussen-Torvik, Jennifer A. Pacheco, Carl Christensen, Timothy M. Herr, Firas H. Wehbe, Justin Starren:
Design and Implementation of an Ancillary Genomics System for the Return of Pharmacogenetic Results. AMIA 2016 - [c20]Yizhen Zhong, Luke V. Rasmussen, Justin Starren, Yuan Luo:
Automatic identification and extraction of design patterns of EHR-driven phenotyping algorithms. AMIA 2016 - [c19]Daniel Fort, Timothy M. Herr, Paul Friedman, Luke V. Rasmussen, Justin Starren:
Using Collaboration Networks to Visualize Patterns in Clinical Trial Recruitment. CRI 2016 - [c18]Huan Mo, Guoqian Jiang, Jennifer A. Pacheco, Richard C. Kiefer, Luke V. Rasmussen, Jyotishman Pathak, Joshua C. Denny, William K. Thompson:
A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform. CRI 2016 - [c17]Niloufar Safaeinili, Luke V. Rasmussen, Richard Chagnon, Jody D. Ciolino, Kathryn L. Jackson, Theresa L. Walunas, Abel N. Kho:
Data Collection Methods to Support a Multi-State Practice Care Transformation Network. CRI 2016 - [c16]Justin Starren, Christopher Bethman, Federico Almaraz, Ryan Chmiel, Michael Bass, Luke V. Rasmussen:
Seamless Integration of Patient Reported Outcomes Assessments into the EHR Workflow. CRI 2016 - 2015
- [j6]Huan Mo
Desiderata for computable representations of electronic health records-driven phenotype algorithms. J. Am. Medical Informatics Assoc. 22(6): 1220-1230 (2015) - [j5]Brian H. Shirts
CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. 22(6): 1231-1242 (2015) - [j4]Jie Xu, Luke V. Rasmussen
Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. J. Am. Medical Informatics Assoc. 22(6): 1251-1260 (2015) - [c15]Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Jennifer A. Pacheco, Enid N. H. Montague, Jie Xu, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak:
Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. AMIA 2015 - [c14]Huan Mo, Jennifer A. Pacheco, Richard C. Kiefer, Luke V. Rasmussen, Jyotishman Pathak, Joshua C. Denny, William K. Thompson:
Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME. AMIA 2015 - [c13]Enid N. H. Montague, Jie Xu, Luke V. Rasmussen, Joshua C. Denny, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Peter Speltz, William K. Thompson, Jyotishman Pathak:
Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools. AMIA 2015 - [c12]Jyotishman Pathak, Joshua C. Denny, William K. Thompson, Luke V. Rasmussen:
PhEMA: Phenotype Modeling, Sharing and Execution Architecture. AMIA 2015 - [c11]Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen
A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. MedInfo 2015: 1098 - 2014
- [j3]Luke V. Rasmussen
Design patterns for the development of electronic health record-driven phenotype extraction algorithms. J. Biomed. Informatics 51: 280-286 (2014) - [c10]David A. Hanauer, Gregory William Hruby, Daniel Fort, Luke V. Rasmussen, Eneida A. Mendonça, Chunhua Weng:
What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support. AMIA 2014 - [c9]Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams:
A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA 2014 - [c8]Luke V. Rasmussen, Jie Xu, Ruijue Liu, Qian Zhu, Jennifer A. Pacheco, Jyotishman Pathak, William K. Thompson, Joshua C. Denny, Huan Mo, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague:
Evaluation of Existing Phenotype Authoring Tools for Clinical Research. AMIA 2014 - [c7]Daniel H. Schneider, Nathan D. Sisterson, Luke V. Rasmussen:
Reproducibility of Health Care Datasets. AMIA 2014 - [c6]Qian Zhu, Huan Mo, Luke V. Rasmussen, Andrew R. Post, Jennifer A. Pacheco, Jie Xu, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Jyotishman Pathak:
Qualitative evaluation of three phenotype information models to find methotrexate liver injury. AMIA 2014 - 2012
- [j2]Peggy L. Peissig, Luke V. Rasmussen
Importance of multi-modal approaches to effectively identify cataract cases from electronic health records. J. Am. Medical Informatics Assoc. 19(2): 225-234 (2012) - [j1]Luke V. Rasmussen
Development of an optical character recognition pipeline for handwritten form fields from an electronic health record. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [c5]Luke V. Rasmussen, Brian D. Athey, Andrew D. Boyd, Bradley A. Malin, Shawn N. Murphy:
Rethinking the "Honest Broker" in the Changing Face of Security and Privacy. AMIA 2012 - [c4]Luke V. Rasmussen, David Were, Jeff Lunt, Steve Lee, Carl Christensen, Warren A. Kibbe, Justin Starren:
Integrating Research Recruitment into a Clinical Patient Portal. AMIA 2012 - [c3]Garima Sharma, Emre Motan, Luke V. Rasmussen, Andrew Winter, Justin Starren:
Grouping and Translating Value Sets. AMIA 2012 - [c2]William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Peggy L. Peissig, Joshua C. Denny, Abel N. Kho, Aaron W. Miller, Jyotishman Pathak:
An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms. AMIA 2012 - [c1]William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Anna Roberts, Arun Muthalagu, Abel N. Kho:
Open Source Workflow Tools for Electronic Health Record Based Phenotyping Algorithms. AMIA 2012
Coauthor Index
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