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Dimitra Karagkouni
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2020 – today
- 2023
- [j10]Pourya Naderi Yeganeh, Yue Y. Teo, Dimitra Karagkouni, Yered Pita-Juárez, Sarah L. Morgan, Frank J. Slack, Ioannis S. Vlachos, Winston A. Hide:
PanomiR: a systems biology framework for analysis of multi-pathway targeting by miRNAs. Briefings Bioinform. 24(6) (2023) - [j9]Spyros Tastsoglou, Athanasios Alexiou, Dimitra Karagkouni, Giorgos Skoufos, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou:
DIANA-microT 2023: including predicted targets of virally encoded miRNAs. Nucleic Acids Res. 51(W1): 148-153 (2023) - [j8]Spyros Tastsoglou, Giorgos Skoufos, Marios Miliotis, Dimitra Karagkouni, Ioannis Koutsoukos, Anna Karavangeli, Filippos S. Kardaras, Artemis G. Hatzigeorgiou:
DIANA-miRPath v4.0: expanding target-based miRNA functional analysis in cell-type and tissue contexts. Nucleic Acids Res. 51(W1): 154-159 (2023) - 2021
- [j7]Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg:
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49(Database-Issue): D212-D220 (2021) - 2020
- [j6]Dimitra Karagkouni, Maria D. Paraskevopoulou, Spyros Tastsoglou, Giorgos Skoufos, Anna Karavangeli, Vasileios Pierros, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou:
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts. Nucleic Acids Res. 48(Database-Issue): D101-D110 (2020)
2010 – 2019
- 2018
- [j5]Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. Nucleic Acids Res. 46(Database-Issue): D239-D245 (2018) - 2016
- [j4]Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Nucleic Acids Res. 44(Database-Issue): 231-238 (2016) - [j3]Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. Nucleic Acids Res. 44(Webserver-Issue): W128-W134 (2016) - 2015
- [j2]Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. Nucleic Acids Res. 43(Database-Issue): 153-159 (2015) - [j1]Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-miRPath v3.0: deciphering microRNA function with experimental support. Nucleic Acids Res. 43(Webserver-Issue): W460-W466 (2015)
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