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Debswapna Bhattacharya
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2020 – today
- 2024
- [i2]Trevor Norton, Debswapna Bhattacharya:
Sifting through the Noise: A Survey of Diffusion Probabilistic Models and Their Applications to Biomolecules. CoRR abs/2406.01622 (2024) - 2023
- [j13]Rahmatullah Roche, Bernard Moussad, Md Hossain Shuvo, Debswapna Bhattacharya
:
E(3) equivariant graph neural networks for robust and accurate protein-protein interaction site prediction. PLoS Comput. Biol. 19(8) (2023) - 2022
- [j12]Da Yan
Guest Editorial for Selected Papers From BIOKDD 2021. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3068-3069 (2022) - 2021
- [j11]Md Hossain Shuvo, Muhammad Gulfam, Debswapna Bhattacharya:
DeepRefiner: high-accuracy protein structure refinement by deep network calibration. Nucleic Acids Res. 49(Webserver-Issue): 147-152 (2021) - [j10]Rahmatullah Roche
Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins. PLoS Comput. Biol. 17(2) (2021) - [c7]Rahmatullah Roche, Sutanu Bhattacharya
Hybridized distance- and contact- based hierarchical protein structure modeling using DConStruct. BCB 2021: 62:1 - [c6]Da Yan, Steve Qin, Debswapna Bhattacharya, Jake Y. Chen, Mohammed J. Zaki:
20th International Workshop on Data Mining in Bioinformatics (BIOKDD 2021). KDD 2021: 4175-4176 - 2020
- [j9]Md Hossain Shuvo, Sutanu Bhattacharya
QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks. Bioinform. 36(Supplement-1): i285-i291 (2020)
2010 – 2019
- 2019
- [j8]Debswapna Bhattacharya
refineD: improved protein structure refinement using machine learning based restrained relaxation. Bioinform. 35(18): 3320-3328 (2019) - [c5]Sutanu Bhattacharya
Contact-assisted Protein Threading: An Evolving New Direction. BCB 2019: 536 - [c4]Sutanu Bhattacharya
How Effective is Contact-assisted Protein Threading? BCB 2019: 553 - 2018
- [c3]Rahul Alapati, Debswapna Bhattacharya:
clustQ: Efficient Protein Decoy Clustering Using Superposition-free Weighted Internal Distance Comparisons. BCB 2018: 307-314 - 2017
- [j7]Renzhi Cao, Badri Adhikari, Debswapna Bhattacharya, Miao Sun, Jie Hou, Jianlin Cheng
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques. Bioinform. 33(4): 586-588 (2017) - 2016
- [j6]Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling. Bioinform. 32(13): 2059-2061 (2016) - [j5]Debswapna Bhattacharya, Renzhi Cao, Jianlin Cheng
UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling. Bioinform. 32(18): 2791-2799 (2016) - [j4]Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
DeepQA: improving the estimation of single protein model quality with deep belief networks. BMC Bioinform. 17: 495:1-495:9 (2016) - [j3]Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
ConEVA: a toolbox for comprehensive assessment of protein contacts. BMC Bioinform. 17: 517:1-517:12 (2016) - [j2]Debswapna Bhattacharya, Jackson Nowotny, Renzhi Cao, Jianlin Cheng
3Drefine: an interactive web server for efficient protein structure refinement. Nucleic Acids Res. 44(Webserver-Issue): W406-W409 (2016) - [i1]Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng:
DeepQA: Improving the estimation of single protein model quality with deep belief networks. CoRR abs/1607.04379 (2016) - 2015
- [j1]Renzhi Cao, Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
Large-scale model quality assessment for improving protein tertiary structure prediction. Bioinform. 31(12): 116-123 (2015) - 2013
- [c2]Debswapna Bhattacharya, Jianlin Cheng
Protein Structure Refinement by Iterative Fragment Exchange. BCB 2013: 106 - [c1]Debswapna Bhattacharya, Jianlin Cheng
Automated protein structure refinement using i3Drefine software and its assessment in CASP10. BCB 2013: 678
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