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Laurel Cooper
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- affiliation: Oregon State University, OR, USA
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2020 – today
- 2023
- [j11]Jennifer L. Clarke
, Laurel D. Cooper
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database J. Biol. Databases Curation 2023 (2023) - [j10]Anne E. Thessen, Laurel Cooper, Tyson L. Swetnam, Harshad Hegde, Justin T. Reese, Justin Elser, Pankaj Jaiswal
Using knowledge graphs to infer gene expression in plants. Frontiers Artif. Intell. 6 (2023) - [i1]Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the AgBioData Consortium. CoRR abs/2307.08958 (2023) - 2022
- [j9]Eric Yao, Victoria C. Blake, Laurel Cooper
GrainGenes: a data-rich repository for small grains genetics and genomics. Database J. Biol. Databases Curation 2022(2022) (2022) - 2021
- [j8]Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49(Database-Issue): D325-D334 (2021) - 2020
- [j7]Elizabeth Arnaud
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. Patterns 1(7): 100105 (2020) - [c9]Laurel Cooper, Marie-Angélique Laporte, Justin Elser, Victoria Carollo Blake, Taner Z. Sen, Chris Mungall, Elizabeth Arnaud, Pankaj Jaiswal:
The Plant Trait Ontology Links Wheat Traits for Crop Improvement and Genomics (short paper). ICBO/ODLS 2020: 1-2
2010 – 2019
- 2018
- [j6]Lisa C. Harper, Jacqueline D. Campbell
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018: bay088 (2018) - [j5]Laurel Cooper, Austin Meier, Marie-Angélique Laporte
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Res. 46(Database-Issue): D1168-D1180 (2018) - [c8]Lorena Endara, J. Gordon Burleigh, Laurel Cooper, Pankaj Jaiswal, Marie-Angélique Laporte, Hong Cui:
A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. ICBO 2018 - [c7]Austin Meier, Marie-Angélique Laporte, Justin Elser, Laurel Cooper, Justin Preece, Pankaj Jaiswal, Jorrit H. Poelen:
OOPS: The Ontology of Plant Stress, A Semi-Automated Standardization Methodology. ICBO 2018 - [p1]Ian Braun, James P. Balhoff, Tanya Z. Berardini, Laurel Cooper, Georgios V. Gkoutos, Lisa C. Harper, Eva Huala, Pankaj Jaiswal, Toni Kazic, Hilmar Lapp
'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. Application of Semantic Technology in Biodiversity Science 2018: 187-205 - [e1]Pankaj Jaiswal, Laurel Cooper, Melissa A. Haendel, Christopher J. Mungall:
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), Corvallis, Oregon, USA, August 7-10, 2018. CEUR Workshop Proceedings 2285, CEUR-WS.org 2018 [contents] - 2017
- [c6]Botong Qu, Prashant Kumar, Eugene Zhang, Pankaj Jaiswal, Laurel Cooper, Justin Elser, Yue Zhang:
Interactive design and visualization of N-ary relationships. SIGGRAPH Asia Symposium on Visualization 2017: 15:1-15:8 - 2016
- [j4]Qinghua Wang, Shabbir Syed-Abdul
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016) - [c5]Laurel Cooper, Austin Meier, Justin Elser, Justin Preece, Xu Xu, Ryan Kitchen, Botong Qu, Eugene Zhang, Sinisa Todorovic, Pankaj Jaiswal, Marie-Angélique Laporte, Elizabeth Arnaud, Seth Carbon, Chris Mungall, Barry Smith, Georgios V. Gkoutos, John H. Doonan:
The Planteome Project. ICBO/BioCreative 2016 - [c4]Marie-Angélique Laporte, Léo Valette, Laurel Cooper, Chris Mungall, Austin Meier, Pankaj Jaiswal, Elizabeth Arnaud:
Comparison of Ontology Mapping Techniques to Map Plant Trait Ontologies. ICBO/BioCreative 2016 - [c3]Austin Meier, Laurel Cooper, Justin Elser, Pankaj Jaiswal, Marie-Angélique Laporte:
Annotating Germplasm to Planteome Reference Ontologies. ICBO/BioCreative 2016 - 2014
- [j3]Nikhil Lingutla, Justin Preece, Sinisa Todorovic, Laurel Cooper, Laura Moore, Pankaj Jaiswal:
AISO: Annotation of Image Segments with Ontologies. J. Biomed. Semant. 5: 50 (2014) - 2013
- [j2]Cecilia N. Arighi
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database J. Biol. Databases Curation 2013 (2013) - 2012
- [j1]Kimberly Van Auken, Petra Fey
Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. Database J. Biol. Databases Curation 2012 (2012) - [c2]Elizabeth Arnaud, Laurel Cooper, Rosemary Shrestha, Naama Menda, Rex T. Nelson, Luca Matteis, Milko Skofic, Ruth Bastow, Pankaj Jaiswal, Lukas A. Mueller, Graham McLaren:
Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes. KEOD 2012: 220-225 - [c1]Ramona L. Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal:
Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. ICBO 2012
Coauthor Index
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