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Samik Ghosh
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2010 – 2019
- 2019
- [r2]Ayako Yachie-Kinoshita, Sucheendra K. Palaniappan, Samik Ghosh:
Computational Systems Biology Applications. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 66-73 - [r1]Sucheendra K. Palaniappan, Ayako Yachie-Kinoshita, Samik Ghosh:
Computational Systems Biology. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 789-795 - 2017
- [i3]Stéphanie Boué, Thomas E. Exner, Samik Ghosh, Vincenzo Belcastro, Joh Dokler, David Page, Akash R. Boda, Filipe Bonjour, Barry J. Hardy, Patrick Vanscheeuwijck, Julia Hoeng, Manuel C. Peitsch:
Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure. F1000Research 6: 12- (2017) - 2016
- [c15]Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh:
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. BioNLP@ACL 2016: 119-127 - [i2]Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh:
Extracting Biological Pathway Models From NLP Event Representations. CoRR abs/1608.03764 (2016) - [i1]Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh:
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. CoRR abs/1608.03767 (2016) - 2015
- [c14]Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh:
Extracting Biological Pathway Models From NLP Event Representations. BioNLP@IJCNLP 2015: 42-51 - 2014
- [j10]Takeshi Hase, Kaito Kikuchi, Samik Ghosh, Hiroaki Kitano, Hiroshi Tanaka:
Identification of drug-target modules in the human protein-protein interaction network. Artif. Life Robotics 19(4): 406-413 (2014) - 2013
- [j9]Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka:
A comprehensive map of the influenza A virus replication cycle. BMC Syst. Biol. 7: 97 (2013) - [j8]Takeshi Hase, Samik Ghosh, Ryota Yamanaka, Hiroaki Kitano:
Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks. PLoS Comput. Biol. 9(11) (2013) - [c13]Yoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Tomohiro Okuyama, Kenichi Hagihara, Samik Ghosh, Yukiko Matsuoka, Yoshihisa Kurachi, Hiroaki Kitano:
A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation. EMBC 2013: 5529-5532 - 2012
- [j7]Satoshi Mizuno, Risa Iijima, Soichi Ogishima, Masataka Kikuchi, Yukiko Matsuoka, Samik Ghosh, Tadashi Miyamoto, Akinori Miyashita, Ryozo Kuwano, Hiroshi Tanaka:
AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease. BMC Syst. Biol. 6: 52 (2012) - 2010
- [j6]Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, Hiroaki Kitano:
Payao: a community platform for SBML pathway model curation. Bioinform. 26(10): 1381-1383 (2010)
2000 – 2009
- 2009
- [j5]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das:
Parametric modeling of protein-DNA binding kinetics: A discrete event based simulation approach. Discret. Appl. Math. 157(10): 2395-2415 (2009) - 2008
- [j4]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das:
Holding time estimation for reactions in stochastic event-based simulation of complex biological systems. Simul. Model. Pract. Theory 16(10): 1615-1639 (2008) - 2007
- [j3]Samik Ghosh, Kalyan Basu, Sajal K. Das:
"MeshUp": Self-organizing mesh-based topologies for next generation radio access networks. Ad Hoc Networks 5(6): 652-679 (2007) - [j2]Habiba Skalli, Samik Ghosh, Sajal K. Das, Luciano Lenzini:
Channel Assignment Strategies for Multiradio Wireless Mesh Networks: Issues and Solutions. IEEE Commun. Mag. 45(11): 86-95 (2007) - [j1]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das:
A Computationally Fast and Parametric Model to Estimate Protein-Ligand Docking Time for Stochastic Event Based Simulation. Trans. Comp. Sys. Biology 8: 14-41 (2007) - [c12]Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das:
Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis. BIBM 2007: 308-316 - [c11]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das:
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes. CIBCB 2007: 439-446 - [c10]Samik Ghosh, Huan Li, Hee Lee, Prabir Das, Kalyan Basu, Sajal K. Das:
Revisiting the Optimal Partitioning of Zones in Next Generation Cellular Networks: A Network Capacity Impact Perspective. ITC 2007: 1011-1023 - 2006
- [c9]Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler:
iSimBioSys: A Discrete Event Simulation Platform for 'in silico' study of biological systems. Annual Simulation Symposium 2006: 204-213 - [c8]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler:
A Stochastic model to estimate the time taken for Protein-Ligand Docking. CIBCB 2006: 1-8 - [c7]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler:
An analytical model to estimate the time taken for cytoplasmic reactions for stochastic simulation of complex biological systems. GrC 2006: 79-84 - [c6]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler:
Stochastic Modeling of Cytoplasmic Reactions in Complex Biological Systems. ICCSA (1) 2006: 566-576 - 2005
- [c5]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das:
A Diffusion Model to Estimate the Inter-arrival Time of Charged Molecules in Stochastic Event based Modeling of Complex Biological Networks. CSB Workshops 2005: 19-22 - [c4]Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das:
iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems. CSB Workshops 2005: 170-171 - [c3]Samik Ghosh, Kalyan Basu, Sajal K. Das:
FraNtiC: A Fractal Geometric Framework for Mesh-Based Wireless Access Networks. ICDCS 2005: 481-490 - [c2]Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das:
GaMa : An Evolutionary Algorithmic Approach for the Design of Mesh-Based Radio Access Networks. LCN 2005: 374-381 - 2004
- [c1]Samik Ghosh, Pradip De, Kalyan Basu, Sajal K. Das:
PeterNet: An Emergent Technology Based Radio Access Network Architecture for Next Generation Cellular Wireless Systems. BROADNETS 2004: 641-650
Coauthor Index
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