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SoftwareX, Volume 23

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Volume 23, July 2023

Original Software Publication

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  - journals/softx/ChaconMaldonadoAMT23
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Andrés Manuel Chacón-Maldonado, Gualberto Asencio-Cortés, Francisco Martínez-Álvarez, Alicia Troncoso:
FS-Studio: An extensive and efficient feature selection experimentation tool for Weka Explorer. 101401
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  - journals/softx/XuG23
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Jiachen Xu, Moritz Grosse-Wentrup:
PyTES: A Python toolbox for closed-loop transcranial electrical stimulation. 101403
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  - journals/softx/StojanovicRK23
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Mario Stojanovic, Francesco Romanò, Hendrik C. Kuhlmann:
MaranStable: A linear stability solver for multiphase flows in canonical geometries. 101405
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  - journals/softx/GundlachBJ23
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Jannek Gundlach, Maximilian Behnke, Christian Jordan:
PROVER-M: A simple model to project the disposal of fine sediments. 101407
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  - journals/softx/DAcciV23
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Luca S. D'Acci, Michele Voto:
Morphogenesis of Isobenefit urbanism: Isobenefit-cities simulator. 101408
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  - journals/softx/PeixotoCRPV23
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João Paulo Just Peixoto, Daniel G. Costa, Washington de J. S. da Franca Rocha, Paulo Portugal, Francisco Vasques:
CityZones: A geospatial multi-tier software tool to compute urban risk zones. 101409
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  - journals/softx/SeguraTinocoC23
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Andrés Segura-Tinoco, Iván Cantador:
ARGAEL: ARGument Annotation and Evaluation tooL. 101410
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  - journals/softx/WuSCGHLQSDH23
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Rui Wu, Connor Scully-Allison, Chase D. Carthen, Andy Garcia, Roger Hoang, Christopher Lewis, Ronn Siedrik Quijada, Jessica Smith, Sergiu M. Dascalu, Frederick C. Harris Jr.:
vFirelib: A GPU-based fire simulation and visualization tool. 101411
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  - journals/softx/HerreraVCMRGA23
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Vanesa Herrera, David Vallejo, José Jesús Castro-Schez, Dorothy Ndedi Monekosso, Ana Reyes-Guzmán, Carlos Glez-Morcillo, Javier Albusac:
Rehab-Immersive: A framework to support the development of virtual reality applications in upper limb rehabilitation. 101412
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Vicente González Ruiz, José-Jesús Fernández:
FlowDenoising: Structure-preserving denoising in 3D electron microscopy (3DEM). 101413
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Emmanuel K. Raptis, Konstantinos Englezos, Orfeas Kypris, Marios Krestenitis, Athanasios Ch. Kapoutsis, Konstantinos Ioannidis, Stefanos Vrochidis, Elias B. Kosmatopoulos:
CoFly: An automated, AI-based open-source platform for UAV precision agriculture applications. 101414
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  - journals/softx/HussainYRMC23
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S. M. Suhail Hussain, Chen Yaohao, Muhammad M. Roomi, Daisuke Mashima, Ee-Chien Chang:
An open-source framework for publishing/subscribing IEC 61850 R-GOOSE and R-SV. 101415
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Christian E. Sosa-Espadas, Mauricio Gabriel Orozco-del-Castillo, Nora L. Cuevas-Cuevas, Juan A. Recio-García:
IREX: Iterative Refinement and Explanation of classification models for tabular datasets. 101420
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Samantha Wittke, Anne Fouilloux, Petteri Lehti, Juuso Varho, Arttu Kivimäki, Maiju Karhu, Mika Karjalainen, Matti Vaaja, Eetu Puttonen:
EODIE - Earth Observation Data Information Extractor. 101421
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Malik Yahiaoui, Denis Mazuyer, Juliette Cayer-Barrioz:
IssyOsborne: transIent Squeeze and Starvation in elastohydrodynamic - OScillating Bodies sOlving Reynolds oNe-dimensional Equation. 101422
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Nathan Fox, Derek B. van Berkel, Ramiro Serrano Verge, Mark Lindquist:
vGameReviews: An R package for harnessing video game reviews for scientific research. 101423
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Kristóf Floch, Attila Kossa:
Motion Tracker Beta: A GUI based open-source motion tracking application. 101424
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  - journals/softx/KhuatG23
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Thanh Tung Khuat, Bogdan Gabrys:
hyperbox-brain: A Python toolbox for hyperbox-based machine learning algorithms. 101425
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Giacomo Longo, Alessandro Orlich, Stefano Musante, Alessio Merlo, Enrico Russo:
MaCySTe: A virtual testbed for maritime cybersecurity. 101426
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  - journals/softx/MoinaRiveraGG23
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Wilmer Moina-Rivera, Juan Gutiérrez-Aguado, Miguel García-Pineda:
Video quality metrics toolkit: An open source software to assess video quality. 101427
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  - journals/softx/AmatoS23
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Gianluca Amato, Francesca Scozzari:
JGMP: Java bindings and wrappers for the GMP library. 101428
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Mattan Tseng, Jack Miller, Dante Goldner, Eliot H. Winer:
XRAE: Extended Reality Acuity Examination. 101429
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  - journals/softx/EvansFTS23
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George S. Evans, Thomas F. Fuerst, Chase N. Taylor, Masashi Shimada:
Hydrogen Permeation and Absorption Tool (HyPAT v2.0): An update to facilitate analyses of data from hydrogen absorption experiments. 101430
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  - journals/softx/SalmonC23
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Fabien Salmon, Ludovic Chatellier:
pyMeshFOAM: Automated meshing for CFD and fluid-structure simulations. 101431
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Jianning Li, André Ferreira, Behrus Puladi, Victor Alves, Michael Kamp, Moon S. Kim, Felix Nensa, Jens Kleesiek, Seyed-Ahmad Ahmadi, Jan Egger:
Open-source skull reconstruction with MONAI. 101432
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Hao Weng, Zhengyang Liu, Dayong Wang:
ALPHA MODEL: A C++ code for modelling and analyzing hydrate-saturation-dependent permeability of hydrate-bearing porous media. 101433
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  - journals/softx/FilippidisS23
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Achilleas Filippidis, Adam J. Sadowski:
Modern analysis of axisymmetric shells with AQUINAS: A MATLAB finite element toolbox. 101434
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  - journals/softx/ContiMSSB23
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Giuvane Conti, Erivelto Mercante, Eduardo Godoy de Souza, Ricardo Sobjak, Claudio Leones Bazzi:
AGDATABOX-RS computational application: Remote sensing data management. 101435
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  - journals/softx/AustadM23
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Henrik Austad, Geir Mathisen:
net_chan: Deterministic network channels for distributed real-time systems. 101436
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  - journals/softx/KrotkaHJMPR23
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Pavla Krotka, Katharina Hees, Peter Jacko, Dominic Magirr, Martin Posch, Marta Bofill Roig:
NCC: An R-package for analysis and simulation of platform trials with non-concurrent controls. 101437
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  - journals/softx/SanzU23
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Victorino Sanz, Alfonso Urquia:
MSGLib: A Modelica library for message passing communication. 101438
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  - journals/softx/SkinnerCKPRWM23
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Grace Skinner, Rob Cooke, Junghyuk Keum, Andy Purvis, Cristina Raw, Ben A. Woodcock, Joseph Millard:
Dynameta: A dynamic platform for ecological meta-analyses in R Shiny. 101439
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  - journals/softx/CaronWCBMB23
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Eddy Caron, Jean-François Witz, Christophe Cuvier, Arnaud Beaurain, Vincent Magnier, Ahmed El Bartali:
PYCASO: Python module for calibration of cameras by Soloff's method. 101440
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  - journals/softx/AliouatKC23
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Ahcen Aliouat, Nasreddine Kouadria, Doru-Florin Chiper:
x-DTT: A package for calculating real and Integer Discrete Tchebichef Transform kernels based on orthogonal polynomials. 101441
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  - journals/softx/PlatasLopezGGCMQ23
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Alejandro Platas-López, Alejandro Guerra-Hernández, Francisco Grimaldo, Nicandro Cruz-Ramírez, Efrén Mezura-Montes, Marcela Quiroz-Castellanos:
dplbnDE: An R package for discriminative parameter learning of Bayesian Networks by Differential Evolution. 101442
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  - journals/softx/BlancoClaracoTMCLM23
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José-Luis Blanco-Claraco, Borys Tymchenko, Francisco-José Mañas-Alvarez, Fernando Cañadas-Aránega, Ángel López-Gázquez, José Carlos Moreno:
MultiVehicle Simulator (MVSim): Lightweight dynamics simulator for multiagents and mobile robotics research. 101443

Software Update

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  - journals/softx/GarouaniBAH23
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Moncef Garouani, Mourad Bouneffa, Adeel Ahmad, Mohamed Hamlich:
Version [2.0]- [AMLBID: An auto-explained Automated Machine Learning tool for Big Industrial Data]. 101444

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  - journals/softx/WijayaFD23
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Agung Danu Wijaya, Dedy Farhamsa, Darmawati Darwis:
netDFT: JAVA Density Functional Theory for solid. 101445
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  - journals/softx/ShamsE23
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Mosayeb Shams, Ahmed H. Elsheikh:
Gym-preCICE: Reinforcement learning environments for active flow control. 101446

Software Update

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  - journals/softx/ZdybalAPS23
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Kamila Zdybal, Elizabeth Armstrong, Alessandro Parente, James C. Sutherland:
PCAfold 2.0 - Novel tools and algorithms for low-dimensional manifold assessment and optimization. 101447

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  - journals/softx/PaganoRCVM23
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Francesco Pagano, Andrea Romdhana, Davide Caputo, Luca Verderame, Alessio Merlo:
SEBASTiAn: A static and extensible black-box application security testing tool for iOS and Android applications. 101448
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  - journals/softx/PujolNadalC23
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Ramón Pujol-Nadal, Gabriel Cardona:
OTSunWebApp: A ray tracing web application for the analysis of concentrating solar-thermal and photovoltaic solar cells. 101449
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  - journals/softx/GonzalezJimenezAMP23
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Miguel González-Jiménez, Héctor Aguilera, Luis Moreno Merino, Amalia Romero Prados:
Q-Facies: A tool for the quantitative interpretation of groundwater hydrochemical facies. 101450
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  - journals/softx/TrianaCamachoQG23
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Daniel A. Triana-Camacho, Jorge H. Quintero-Orozco, Enrique García-Macías:
Pypiezo-GO: A software tool for processing electromechanical measurements of piezoelectric reduced graphene oxide-cement composites. 101451
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  - journals/softx/GarciaLopezCHH23
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Adrián García-López, Oscar Chávez-Bosquez, José Hernández-Torruco, Betania Hernández-Ocaña:
JMetaBFOP: A tool for solving global optimization problems. 101452
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  - journals/softx/RadkeHRVFAKPW23
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Karl Ludger Radke, Janina Hußmann, Lena Röwer, Dirk Voit, Jens Frahm, Gerald Antoch, Dirk Klee, Frank Pillekamp, Hans-Jörg Wittsack:
"shortCardiac" - An open-source framework for fast and standardized assessment of cardiac function. 101453
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  - journals/softx/Portioli23
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Francesco P. A. Portioli:
DynABlock_2D: An optimization-based MATLAB application for rocking dynamics, nonlinear static and limit analysis of masonry block structures. 101454
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  - journals/softx/Weber23
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Tobias Weber:
Motion planning for triple-axis spectrometers. 101455
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  - journals/softx/KhatamiF23
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Siamak Khatami, Christopher Frantz:
Copatrec: A correlation pattern recognizer Python package for nonlinear relations. 101456
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  - journals/softx/Henao23
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Juan David Velásquez Henao:
TechMiner: Analysis of bibliographic datasets using Python. 101457
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  - journals/softx/OverbergBWM23
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Florian A. Overberg, Philipp C. Böttcher, Dirk Witthaut, Simon Morgenthaler:
Emipy: An open-source Python-based tool to analyze industrial emissions in Europe. 101458
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  - journals/softx/KrasanakisPK23
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Emmanouil Krasanakis, Symeon Papadopoulos, Ioannis Kompatsiaris:
JGNN: Graph Neural Networks on native Java. 101459
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  - journals/softx/AntoJRJP23
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Anito Anto, Linda Rose Jimson, Tanya Rose, Mohammed Jafrin, Mahesh Raveendranatha Panicker:
SPAALUV: Software Package for Automated Analysis of Lung Ultrasound Videos. 101460
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Tarek Berghout, Mohamed Benbouzid:
PrognosEase: A data generator for health deterioration prognosis. 101461
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Yuma Ito, Masanori Hirose, Makio Tokunaga:
Slitflow: A Python framework for single-molecule dynamics and localization analysis. 101462
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Ugur Yayan, Cem Baglum:
Tailored mutation-based software fault injection tool (IM-FIT). 101463
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Mohsen Yoosefzadeh-Najafabadi, Ali Heidari, Istvan Rajcan:
AllInOne Pre-processing: A comprehensive preprocessing framework in plant field phenotyping. 101464
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Luana Souza Almeida, Alireza Ghasemi, Floris Goerlandt:
E-ARCP: An exact solution approach to the Collaborative Multi-vehicle Prize Collecting Arc Routing for Connectivity Problem. 101465
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Igor Betkier, Mateusz Oszczypala, Janusz Pobozniak, Sergiusz Sobieski, Przemyslaw Betkier:
PocketFinderGNN: A manufacturing feature recognition software based on Graph Neural Networks (GNNs) using PyTorch Geometric and NetworkX. 101466
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Alberto Robles Enciso, Ricardo Robles-Enciso, Antonio F. Skarmeta:
Sim-PowerCS: An extensible and simplified open-source energy simulator. 101467
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Jie Ma, Qianlian Wang:
TransRNM - A traffic flow and demand prediction tool for transportation network with ridesharing services. 101468
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Greig Oldford, David Cote, Dan G. Kehler, Gabrielle R. Riefesel, Yolanda F. Wiersma:
FIPEX v10.4: An ArcGIS Desktop Add-in for assessing impacts of fish passage barriers and longitudinal connectivity of rivers. 101469
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Hui Li, Bixia Sun, Yuan Fang, Mengyao Zhang, Haitao Liu:
GWGPM: Generator of wallpaper group patterns for molecular visualization. 101470

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Tobias Weber:
Update 2.5 to "Takin: An open-source software for experiment planning, visualisation, and data analysis", (PII: S2352711016300152). 101471

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Arsi Ikäheimonen, Ana M. Triana, Nguyen Luong, Amirmohammad Ziaei, Jarno Rantaharju, Richard Darst, Talayeh Aledavood:
Niimpy: A toolbox for behavioral data analysis. 101472
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Zachary J. Ruff, Damon B. Lesmeister, Julianna M. A. Jenkins, Christopher M. Sullivan:
PNW-Cnet v4: Automated species identification for passive acoustic monitoring. 101473
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Fernando Sola, Daniel Ayala, Rafael Ayala, Inma Hernández, Carlos R. Rivero, David Ruiz:
AYNEXT - tools for streamlining the evaluation of link prediction techniques. 101474
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George S. Evans, Joseph M. Watkins, Chase N. Taylor, Jagoda Urban-Klaehn, Chuting T. Tsai:
CDB-AP: An application for coincidence Doppler broadening spectroscopy analysis. 101475
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Bogdan Ruszczak, Krzysztof Kotowski, Jacek Andrzejewski, Christoph Haskamp, Jakub Nalepa:
OXI: An online tool for visualization and annotation of satellite time series data. 101476
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Jaehyun Ahn, Haifa Gaza, Juhyeok Lee, Hyeongchan Kim, Jaewook Byun:
Oliot EPCIS: An open-source EPCIS 2.0 system for supply chain transparency. 101477
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Akshay Antony, Chakradhar Guntuboina, Rishikesh Magar, Lalit Ghule, Ruchit Doshi, Aman Khalid, Sharan Seshadri, Amir Barati Farimani:
ManufacturingNet: A machine learning toolbox for engineers. 101478

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Miguel Angel Mendoza-Lugo, Oswaldo Morales-Nápoles:
Version 1.3-BANSHEE - A MATLAB toolbox for Non-Parametric Bayesian Networks. 101479

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Rodrique Kafando, Rémy Découpes, Mathieu Roche, Maguelonne Teisseire:
SNEToolkit: Spatial named entities disambiguation toolkit. 101480
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Michael Iro, Dieter Ingerle, Sven Hampel, Ursula Fittschen, Vishal Dhamgaye, Oliver Fox, Christina Streli:
voxTrace: A voxel-based Monte-Carlo ray-tracing code for the simulation of X-ray fluorescence spectra. 101481
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Wanwara Thuptimdang, Patjanaporn Chalacheva, Thomas D. Coates, Michael C. K. Khoo:
McDAPS: A multi-channel physiological signals display and analysis system for clinical researchers. 101482
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David Montgomery, Federico Municchi, Karin Leiderman:
clotFoam: An open-source framework to simulate blood clot formation under arterial flow. 101483
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Thomas Wolgast, Nils Wenninghoff, Stephan Balduin, Eric M. S. P. Veith, Bastian Fraune, Torben Woltjen, Astrid Nieße:
ANALYSE - Learning to attack cyber-physical energy systems with intelligent agents. 101484
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François Lédée, Pierryves Padey, Kyriaki Goulouti, Sébastien Lasvaux, Didier Beloin-Saint-Pierre:
EcoDynElec: Open Python package to create historical profiles of environmental impacts from regional electricity mixes. 101485
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Simon Brehm, Cameliu Himcinschi, Jakob Kraus, Jens Kortus:
PyRamanGUI: Open-source graphical user interface for analyzing Raman spectra. 101486
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Gonca Gürses-Tran, Florian Oppermann, Antonello Monti:
ProLoaF: Probabilistic load forecasting for power systems. 101487
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Mustapha Aatila, Abdellah Kadem, Mohamed Lachgar, Khalid Lamhaddab, Hamid Hrimech, Ali Kartit:
DLDiagnosis: A mobile and web application for diseases classification using Deep Learning. 101488
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  - journals/softx/GermanY23
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Peter German, Dewen Yushu:
Enabling scientific machine learning in MOOSE using Libtorch. 101489
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  - journals/softx/AmbrosioCesteroRJ23
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Gregorio Ambrosio-Cestero, José-Raúl Ruiz-Sarmiento, Javier González Jiménez:
The Robot@Home2 dataset: A new release with improved usability tools. 101490
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  - journals/softx/NakajimaIPAB23
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Evandro Alves Nakajima, Antonio Augusto Ignacio, Suzan Kelly Borges Piovesan, Helton Jose Alves, Carlos Eduardo Borba:
DRMSimulator: Software for simulation of the Dry Reforming of Methane (DRM) process. 101491
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Luca De Nardis, Maria-Gabriella Di Benedetto, Jeung-Yoon Choi, Stefanie Shattuck-Hufnagel:
xkl: A legacy software for detailed acoustic analysis of speech made modern. 101492
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Daniel Gacitúa, Roberto I. González-Ibáñez:
LETICIA: A toolbox for search task deployment, execution, and user interaction logging on interactive information retrieval studies. 101493
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  - journals/softx/StepienO23
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Igor Stepien, Mariusz Oszust:
TIQA-PSI: Toolbox for perceptual Image Quality Assessment of Pan-Sharpened Images. 101494
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Przemyslaw Aszkowski, Bartosz Ptak, Marek Kraft, Dominik Pieczynski, Pawel Drapikowski:
Deepness: Deep neural remote sensing plugin for QGIS. 101495
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  - journals/softx/CarvalhoBPC23
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Tiago Carvalho, João Bispo, Pedro Pinto, João M. P. Cardoso:
A DSL-based runtime adaptivity framework for Java. 101496
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  - journals/softx/TanK23
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Ziya Tan, Mehmet Karaköse:
A new approach for drone tracking with drone using Proximal Policy Optimization based distributed deep reinforcement learning. 101497
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  - journals/softx/OzcevikA23
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Yusuf Özçevik, Osman Altay:
MetricHunter: A software metric dataset generator utilizing SourceMonitor upon public GitHub repositories. 101499
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Xiaotong Li, Karel Adámek, Wes Armour:
GPU accelerated singular value thresholding. 101500
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Geunseong Jung, Jaehyuk Cha:
A WebExtension framework for experimentation and evaluation of webpage segmentation methods. 101501
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Sebastian Montoya Villada, Erick Reyes-Vera, Mauricio Arias-Correa:
AnIMAGE: A MATLAB-based tool for generating microstrip antennas with complex shapes. 101502
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Alexander D. Lindsay, Guillaume L. Giudicelli, Peter German, John W. Peterson, Yaqi Wang, Ramiro Freile, David Andrs, Paolo Balestra, Mauricio Tano, Rui Hu, Ling Zou, Derek Gaston, Cody J. Permann, Sebastian Schunert:
MOOSE Navier-Stokes module. 101503
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  - journals/softx/KulasW23
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Daniel Kulas, Michal R. Wróbel:
AffecTube - Chrome extension for YouTube video affective annotations. 101504
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  - journals/softx/DaoleSBDMR23
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Mattia Daole, Alessio Schiavo, José Luis Corcuera Bárcena, Pietro Ducange, Francesco Marcelloni, Alessandro Renda:
OpenFL-XAI: Federated learning of explainable artificial intelligence models in Python. 101505
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Benjamin Jakimow, Andreas Janz, Fabian Thiel, Akpona Okujeni, Patrick Hostert, Sebastian van der Linden:
EnMAP-Box: Imaging spectroscopy in QGIS. 101507
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  - journals/softx/CarvalloJA23
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Andrés Carvallo, Ignacio Jorquera, Carlos Aspillaga:
CoTranslate: A web-based tool for crowdsourcing high-quality sentence pair corpora. 101508
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  - journals/softx/SandovalEspinoLMAPV23
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Jorge Arturo Sandoval-Espino, Álvaro Zamudio Lara, José Antonio Marbán-Salgado, J. Jesús Escobedo Alatorre, Omar Palillero-Sandoval, J. Guadalupe Velásquez-Aguilar:
Image set preparation: A platform to prepare a myoelectric signal to train a CNN. 101509
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  - journals/softx/Azis23
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Mohammad Ivan Azis:
2D-xtDCR-LTBEM: A Fortran code for numerical solutions to the unsteady anisotropic-DCR equation of spatio-temporal coefficients. 101510
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  - journals/softx/McGhee23
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Raheal McGhee:
GOMap: A Python-developed GIS opportunity mapping tool for renewable energy technologies. 101511
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  - journals/softx/PalaniappanMS23
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Arunkumar Palaniappan, Ramaswamy Muthiah, Murugesh Tiruchi Sundaram:
ZigBee enabled IoT based intelligent lane control system for autonomous agricultural electric vehicle application. 101512
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Themistoklis Koutsellis, Georgios Xexakis, Konstantinos Koasidis, Natasha Frilingou, Anastasios Karamaneas, Alexandros Nikas, Haris Ch. Doukas:
In-Cognitive: A web-based Python application for fuzzy cognitive map design, simulation, and uncertainty analysis based on the Monte Carlo method. 101513
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Elias Laurin Meyer, Tobias Mielke, Tom Parke, Peter Jacko, Franz Koenig:
SIMPLE - A modular tool for simulating complex platform trials. 101515
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Dimitrios Iliadis, Bernard De Baets, Willem Waegeman:
DeepMTP: A Python-based deep learning framework for multi-target prediction. 101516
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Richard Polzin, Sebastian Johannes Fritsch, Konstantin Sharafutdinov, Gernot Marx, Andreas Schuppert:
Diagnostic Expert Advisor: A platform for developing machine learning models on medical time-series data. 101517

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