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Natural Computing, Volume 9

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Volume 9, Number 1, March 2010

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Natalio Krasnogor, Giuseppe Nicosia, Mario Pavone, David A. Pelta:
Special issue on Nature Inspired Cooperative Strategies for Optimisation (NICSO). 1-3
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Yannis Marinakis, Magdalene Marinaki, Georgios Dounias:
Honey Bees Mating Optimization algorithm for large scale vehicle routing problems. 5-27
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Sergio Consoli, José Andrés Moreno-Pérez, Kenneth Darby-Dowman, Nenad Mladenovic:
Discrete Particle Swarm Optimization for the minimum labelling Steiner tree problem. 29-46
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Gregory Z. Gutin, Daniel Karapetyan:
A memetic algorithm for the generalized traveling salesman problem. 47-60
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Alberto Castellini, Giuditta Franco, Vincenzo Manca:
Hybrid Functional Petri Nets as MP systems. 61-81
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Rodica Ioana Lung, Dumitru Dumitrescu:
Evolutionary swarm cooperative optimization in dynamic environments. 83-94
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Friedrich C. Simmel, Ashish Goel:
Foreword. 95-96
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Chris Luhrs:
Polyomino-safe DNA self-assembly via block replacement. 97-109
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Stanislav Angelov, Sanjeev Khanna, Mirkó Visontai:
Robust self-assembly of graphs. 111-133
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Matthew J. Patitz, Scott M. Summers:
Self-assembly of discrete self-similar fractals. 135-172
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Yusuke Nakagawa, Katsuyuki Yugi, Kenji Tsuge, Mitsuhiro Itaya, Hiroshi Yanagawa, Yasubumi Sakakibara:
Operon structure optimization by random self-assembly. 173-181
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John H. Reif, Urmi Majumder:
Isothermal reactivating Whiplash PCR for locally programmable molecular computation. 183-206
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Ken Komiya, Masayuki Yamamura, John A. Rose:
Experimental validation and optimization of signal dependent operation in whiplash PCR. 207-218
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Andrew Adamatzky, Jeff Jones:
Programmable reconfiguration of Physarum machines. 219-237
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Mark Daley, Ian McQuillan:
Modelling programmed frameshifting with frameshift machines. 239-261
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Leon Poladian:
Effect of parent selection and sibling rivalry on building-block assembly. 263-282
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Tobias Friedrich, Frank Neumann:
When to use bit-wise neutrality. 283-294

Volume 9, Number 2, June 2010

Unconventional Computing 2007

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Michael J. Dinneen:
Foreword. 295
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Lila Kari, Kalpana Mahalingam:
Watson-Crick palindromes in DNA computing. 297-316
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Karoline Wiesner, James P. Crutchfield:
Computation in Sofic Quantum Dynamical Systems. 317-327
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P. Oscar Boykin, Tal Mor, Vwani P. Roychowdhury, Farrokh Vatan:
Algorithms on ensemble quantum computers. 329-345
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Linmin Yang, Zhe Dang, Oscar H. Ibarra:
Bond computing systems: a biologically inspired and high-level dynamics model for pervasive computing. 347-364
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Lev Goldfarb:
Representation before computation. 365-379

Models and Algorithms for Natural Processes honoring Professor Giancarlo Mauri

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Paola Bonizzoni, Gheorghe Paun, Grzegorz Rozenberg, Claudio Zandron:
Preface. 381-382
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Alberto Bertoni, Carlo Mereghetti, Beatrice Palano:
Trace monoids with idempotent generators and measure-only quantum automata. 383-395
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Paola Bonizzoni, Clelia de Felice, Gabriele Fici, Rosalba Zizza:
On the regularity of circular splicing languages: a survey and new developments. 397-420
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Gianluca Della Vedova, Riccardo Dondi, Tao Jiang, Giulio Pavesi, Yuri Pirola, Lusheng Wang:
Beyond evolutionary trees. 421-435
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Egor Dolzhenko, Natasa Jonoska, Nadrian C. Seeman:
Transducer generated arrays of robotic nano-arms. 437-455
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Marian Gheorghe, Vincenzo Manca, Francisco José Romero-Campero:
Deterministic and stochastic P systems for modelling cellular processes. 457-473
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Oscar H. Ibarra, Mario J. Pérez-Jiménez, Takashi Yokomori:
On spiking neural P systems. 475-491
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Alberto Leporati, Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Claudio Ferretti:
Computing with energy and chemical reactions. 493-512

Volume 9, Number 3, September 2010

Special Issue "Artificial Immune Systems - ICARIS 2007"

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Emmanuel Sapin, Andrew Adamatzky, Pierre Collet, Larry Bull:
Stochastic automated search methods in cellular automata: the discovery of tens of thousands of glider guns. 513-543
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Nikolaos Nanas, Anne N. De Roeck:
A review of evolutionary and immune-inspired information filtering. 545-573
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Leandro Nunes de Castro, Jon Timmis, Helder Knidel, Fernando J. Von Zuben:
Artificial Immune Systems: structure, function, diversity and an application to biclustering. 575-577
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Pablo Alberto Dalbem de Castro, Fabrício Olivetti de França, Hamilton M. Ferreira, Guilherme Palermo Coelho, Fernando J. Von Zuben:
Query expansion using an immune-inspired biclustering algorithm. 579-602
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Emma Hart, Hugues Bersini, Francisco C. Santos:
Structure versus function: a topological perspective on immune networks. 603-624
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Rodrigo Pasti, Leandro Nunes de Castro, Guilherme Palermo Coelho, Fernando J. Von Zuben:
Neural network ensembles: immune-inspired approaches to the diversity of components. 625-653
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Eric Bonabeau, David Corne, Riccardo Poli:
Swarm intelligence: the state of the art special issue of natural computing. 655-657
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Hanning Chen, Yunlong Zhu, Kunyuan Hu:
Discrete and continuous optimization based on multi-swarm coevolution. 659-682
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Isabella Lona Schoeman, Andries P. Engelbrecht:
A novel particle swarm niching technique based on extensive vector operations. 683-701
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Hongfeng Wang, Shengxiang Yang, W. H. Ip, Dingwei Wang:
A particle swarm optimization based memetic algorithm for dynamic optimization problems. 703-725
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Esmat Rashedi, Hossein Nezamabadi-pour, Saeid Saryazdi:
BGSA: binary gravitational search algorithm. 727-745
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Mohammad A. Abido:
Multiobjective particle swarm optimization with nondominated local and global sets. 747-766
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Abbas Ahmadi, Fakhri Karray, Mohamed S. Kamel:
Flocking based approach for data clustering. 767-791

Volume 9, Number 4, December 2010

Part I: Special issue "Unconventional Computing 2008" /PartII: Special issue "Optical Supercomputing"/PartIII: Regular Papers

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Cristian S. Calude, José Félix Costa:
Preface to the Special Issue Unconventional Computing 2008. 793-794
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Giorgio Delzanno, Laurent Van Begin:
On the verification of membrane systems with dynamic structure. 795-818
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Naya Nagy, Marius Nagy, Selim G. Akl:
Quantum security in wireless sensor networks. 819-830
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Turlough Neary:
On the computational complexity of spiking neural P systems. 831-851
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Petrus H. Potgieter, Elemér E. Rosinger:
Output concepts for accelerated Turing machines. 853-864
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Linmin Yang, Yong Wang, Zhe Dang:
Automata and processes on multisets of communicating objects. 865-887
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Shlomi Dolev, Tobias Haist, Mihai Oltean:
Introduction to special issue on Optical SuperComputing. 889-890
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Amir Anter, Shlomi Dolev:
Optical solution for hard on average #P-complete instances (using exponential space for solving instances of the permanent). 891-902
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Goutam Kumar Maity, Tanay Chattopadhyay, Dilip Kumar Gayen, Chinmoy Taraphdar, Anup Kumar Maiti, Santi P. Maity, Jitendra Nath Roy:
All-optical binary flip-flop with the help of Terahertz Optical Asymmetric Demultiplexer. 903-916
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Amal K. Ghosh, Amitabha Basuray:
Binary to modified trinary number system conversion and vice-versa for optical super computing. 917-934
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Mark Daley, Kalpana Mahalingam:
A relation by palindromic subwords. 935-954
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Paolo Baldan, Nicoletta Cocco, Andrea Marin, Marta Simeoni:
Petri nets for modelling metabolic pathways: a survey. 955-989
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Sangram Bagh, David R. McMillen:
A synthetic genetic circuit whose signal-response curve is temperature-tunable from band-detection to sigmoidal behaviour. 991-1006

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