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Natural Computing, Volume 10
Volume 10, Number 1, March 2011
- Roberto Barbuti, Giuditta Franco
, Gheorghe Paun:
Foreword. 1-2 - Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini
Spatial P systems. 3-16 - Francesco Bernardini, Robert Brijder
On aggregation in multiset-based self-assembly of graphs. 17-38 - Mónica Cardona, M. Àngels Colomer, Antoni Margalida
A computational modeling for real ecosystems based on P systems. 39-53 - Alberto Castellini, Giuditta Franco
Data analysis pipeline from laboratory to MP models. 55-76 - Michael Cauchi, Luca Bianco
The quantification of pollutants in drinking water by use of artificial neural networks. 77-90 - Vincenzo Cutello
On discrete models and immunological algorithms for protein structure prediction. 91-102 - Eugen Czeizler
Towards a neighborhood simplification of tile systems: From Moore to quasi-linear dependencies. 103-117 - Ángel Goñi-Moreno
Biocircuit design through engineering bacterial logic gates. 119-127 - Tom Head:
Computing transparently: the independent sets in a graph. 129-138 - John Jack, Andrei Paun
A review of the nondeterministic waiting time algorithm. 139-149 - Raluca Lefticaru
An empirical evaluation of P system testing techniques. 151-165 - Antonio E. Porreca
P systems with active membranes: trading time for space. 167-182 - Jon Timmis
Editorial for special issue on the interaction between computation and biology. 187-188 - Wei Pang
An immune-inspired approach to qualitative system identification of biological pathways. 189-207 - Heder S. Bernardino
Grammar-based immune programming. 209-241 - Martin Drozda
Priming: making the reaction to intrusion or fault predictable. 243-274 - Mohd Zakree Ahmad Nazri, Siti Mariyam Hj. Shamsuddin, Azuraliza Abu Bakar, Salwani Abdullah:
A hybrid approach for learning concept hierarchy from Malay text using artificial immune network. 275-304 - Nick C. Woolley, Jovica V. Milanovic:
An immune system inspired clustering and classification method to detect critical areas in electrical power networks. 305-333 - Russell J. Deaton:
Forward. 335-336 - Aaron D. Sterling:
Distributed agreement in tile self-assembly. 337-355 - Ya Meng, Navin Kashyap:
The effect of malformed tiles on tile assemblies within the kinetic tile assembly model. 357-373 - Max H. Garzon, Tit-Yee Wong
DNA chips for species identification and biological phylogenies. 375-389 - Ján Manuch, Chris Thachuk, Ladislav Stacho, Anne Condon:
NP-completeness of the energy barrier problem without pseudoknots and temporary arcs. 391-405 - Luca Cardelli
Strand algebras for DNA computing. 407-428 - Paolo Bottoni
Complexity-preserving simulations among three variants of accepting networks of evolutionary processors. 429-445 - Urmi Majumder, John H. Reif:
Design of a biomolecular device that executes process algebra. 447-466 - Ashish Goel, Morteza Ibrahimi:
A renewable, modular, and time-responsive DNA circuit. 467-485 - Xiaoying Pan, Licheng Jiao
An improved multi-agent genetic algorithm for numerical optimization. 487-506 - Teng Nga Sing, Jason Teo
Evolutionary and population dynamics of 3 parents differential evolution (3PDE) using self-adaptive tuning methodologies. 507-526 - Laura Diosan, Mihai Oltean
Friction-based sorting. 527-539 - Masud Hasan, S. M. Shabab Hossain, Md. Mahmudur Rahman, M. Sohel Rahman
Solving the generalized Subset Sum problem with a light based device. 541-550 - Fabio R. J. Vieira, Valmir Carneiro Barbosa
Optimization of supply diversity for the self-assembly of simple objects in two and three dimensions. 551-581 - Vamsi Kundeti, Sanguthevar Rajasekaran:
Efficient algorithms for self assembling non-rectangular nano structures. 583-594 - Ion Petre
A simple mass-action model for the eukaryotic heat shock response and its mathematical validation. 595-612 - Niall Murphy, Damien Woods
The computational power of membrane systems under tight uniformity conditions. 613-632
Volume 10, Number 2, June 2011
- Monika Heiner
Preface: Petri nets for Systems and Synthetic Biology. 633-638 - Wolfgang Marwan, Annegret Wagler, Robert Weismantel:
Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks. 639-654 - Annegret Wagler, Robert Weismantel:
The combinatorics of modeling and analyzing biological systems. 655-681 - Kurt Lautenbach, Alexander Pinl:
A Petri net representation of Bayesian message flows: importance of Bayesian networks for biological applications. 683-709 - Anastasia Pagnoni:
Error-correcting Petri nets. 711-725 - Claudine Chaouiya
Petri net representation of multi-valued logical regulatory graphs. 727-750 - David Angeli:
Boundedness analysis for open Chemical Reaction Networks with mass-action kinetics. 751-774 - Erzsébet Csuhaj-Varjú, Kai Salomaa:
Editorial: Computing with biomolecules. 775-776 - Bogdan Aman
Mutual mobile membranes with objects on surface. 777-793 - Mark Daley, Ian McQuillan
Theoretical and computational properties of transpositions. 795-804 - Giuditta Franco
Algorithmic applications of XPCR. 805-819 - Rudolf Freund, Sergey Verlan
(Tissue) P systems working in the k-restricted minimally or maximally parallel transition mode. 821-833 - Alexander Krassovitskiy
Computational power of insertion-deletion (P) systems with rules of size two. 835-852 - Matthew J. Patitz
Self-assembly of decidable sets. 853-877 - Elena Rivero-Gil, Miguel Angel Gutiérrez-Naranjo
A software tool for generating graphics by means of P systems. 879-890 - Sarab Al Muhaideb
Evolutionary computation approaches to the Curriculum Sequencing problem. 891-920 - Marcin Budka, Bogdan Gabrys:
Electrostatic field framework for supervised and semi-supervised learning from incomplete data. 921-945 - Fusheng Xiong, Wayne D. Frasch:
Padlock probe-mediated qRT-PCR for DNA computing answer determination. 947-959 - Hans-Jörg Kreowski, Sabine Kuske:
Graph multiset transformation: a new framework for massively parallel computation inspired by DNA computing. 961-986
Volume 10, Number 3, September 2011
- Monika Heiner
Preface: Petri nets for Systems and Synthetic Biology. 987-992 - Eva M. Rodriguez, Anita Rudy, Ricardo C. H. del Rosario, Angelika M. Vollmar, Eduardo R. Mendoza:
A discrete Petri net model for cephalostatin-induced apoptosis in leukemic cells. 993-1015 - Louchka Popova-Zeugmann:
Quantitative evaluation of time-dependent Petri nets and applications to biochemical networks. 1017-1043 - Ruth Lamprecht, Gregory D. Smith, Peter Kemper:
Stochastic Petri net models of Ca2+ signaling complexes and their analysis. 1045-1075 - Ming Chen
Petri net models for the semi-automatic construction of large scale biological networks. 1077-1097 - Hiroshi Matsuno, Masao Nagasaki, Satoru Miyano:
Hybrid Petri net based modeling for biological pathway simulation. 1099-1120 - Natasha Jonoska, Gregory L. McColm, Ana Staninska:
On stoichiometry for the assembly of flexible tile DNA complexes. 1121-1141 - Gerard Briscoe, Suzanne Sadedin
Digital Ecosystems: Ecosystem-Oriented Architectures. 1143-1194 - Andrew Adamatzky, Genaro Juárez Martínez, Sergio V. Chapa Vergara, René Asomoza-Palacio, Christopher R. Stephens:
Approximating Mexican highways with slime mould. 1195-1214
Volume 10, Number 4, December 2011
- José Félix Costa
Introduction. 1215-1217 - Masashi Aono
Greedy versus social: resource-competing oscillator network as a model of amoeba-based neurocomputer. 1219-1244 - Ed Blakey:
Unconventional complexity measures for unconventional computers. 1245-1259 - Jérôme Durand-Lose:
Abstract geometrical computation 5: embedding computable analysis. 1261-1273 - Enrico Formenti
On the hierarchy of conservation laws in a cellular automaton. 1275-1294 - Daniel Silva Graça
Computability in planar dynamical systems. 1295-1312 - Ellie D'Hondt
Distributed quantum programming. 1313-1343 - Jeff Jones:
Influences on the formation and evolution of Physarum polycephalum inspired emergent transport networks. 1345-1369 - Karl Svozil
Quantum value indefiniteness. 1371-1382 - Benjamin Wells:
Unwinding performance and power on Colossus, an unconventional computer. 1383-1405 - Karthik Sindhya, Kalyanmoy Deb, Kaisa Miettinen
Improving convergence of evolutionary multi-objective optimization with local search: a concurrent-hybrid algorithm. 1407-1430 - Paskorn Champrasert
Evolutionary high-dimensional QoS optimization for safety-critical utility communication networks. 1431-1458
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