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Journal of Integrative Bioinformatics, Volume 7
Volume 7, Number 1, 2010
- Raed I. Hamed, Syed I. Ahson, Rafat Parveen:
A New Approach for Modelling Gene Regulatory Networks Using Fuzzy Petri Nets. - Dennis Heimann, Jens Nieschulze, Birgitta König-Ries
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A flexible statistics web processing service - Added value for information systems for experiment data. - Herbert Thiele, Jörg Glandorf, Peter Hufnagel:
Bioinformatics Strategies in Life Sciences: From Data Processing and Data Warehousing to Biological Knowledge Extraction. - Benjamin Kormeier, Klaus Hippe, Thoralf Töpel, Ralf Hofestädt:
CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. - V. Mallika, K. C. Sivakumar, S. Jaichand, E. V. Soniya:
Kernel based machine learning algorithm for the efficient prediction of type III polyketide synthase family of proteins. - Debmalya Barh, Dattatraya Bhat, Cedric Viero
miReg: a resource for microRNA regulation. - Su Yean Ong, Fui Ling Ng, Siti Suriawati Badai, Anton Yuryev
Analysis and construction of pathogenicity island regulatory pathways in Salmonella enterica serovar Typhi. - Daniel Glez-Peña
PathJam: a new service for integrating biological pathway information. - Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. - Paola Lecca, Adaoha E. C. Ihekwaba
Stochastic simulation of the spatio-temporal dynamics of reaction-diffusion systems: the case for the bicoid gradient. - Raimo Franke
From Binary to Multivalued to Continuous Models: The Lac Operon as a Case Study.
Volume 7, Number 2, 2010
- Matthias Lange
The LAILAPS Search Engine: Relevance Ranking in Life Science Databases. - Farhat N. Memon, Anne M. Owen, Olivia Sanchez-Graillet, Graham J. G. Upton, Andrew P. Harrison:
Identifying the impact of G-Quadruplexes on Affymetrix 3' Arrays using Cloud Computing. - Christian Klukas, Falk Schreiber:
Integration of -omics data and networks for biomedical research with VANTED. - Olivia Sanchez-Graillet, Maria A. Stalteri, Joanna Rowsell
Using surveys of Affymetrix GeneChips to study antisense expression. - Benjamin Kormeier, Klaus Hippe, Patrizio Arrigo
Reconstruction of biological networks based on life science data integration. - (Withdrawn) Towards prediction and prioritization of disease genes by the modularity of human phenome-genome assembled network.
Volume 7, Number 3, 2010
- Stephan Symons, Christian Zipplies, Florian Battke
Integrative Systems Biology Visualization with MAYDAY. - Simon J. Cockell
An integrated dataset for in silico drug discovery. - Tobias Wittkop, Sven Rahmann
Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0. - Matthias Lange
The LAILAPS Search Engine: A Feature Model for Relevance Ranking in Life Science Databases. - Giorgio Ghisalberti, Marco Masseroli, Luca Tettamanti:
Quality controls in integrative approaches to detect errors and inconsistencies in biological databases. - Vesna Memisevic, Tijana Milenkovic, Natasa Przulj
An integrative approach to modeling biological networks. - Keywan Hassani-Pak
Enhancing Data Integration with Text Analysis to Find Proteins Implicated in Plant Stress Response. - Detlef Groth, Stefanie Hartmann, Martin Friemel, Natascha Hill, Stefan Muller, Albert J. Poustka, Georgia Panopoulou:
Data integration using scanners with SQL output - The Bioscanners project at sourceforge. - Rasmus H. Fogh, Wayne Boucher, John M. C. Ionides, Wim F. Vranken
MEMOPS: Data modelling and automatic code generation.. - Ernest A. A. van Ophuizen, Jack A. M. Leunissen:
An evaluation of the performance of three semantic background knowledge sources in comparative anatomy. - Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. - Da Qi, Ross D. King, Andrew L. Hopkins
An Ontology for Description of Drug Discovery Investigations. - Yanju Zhang, Fons J. Verbeek:
Comparison and Integration of Target Prediction Algorithms for microRNA Studies. - Mounia Belmamoune, Dome Potikanond, Fons J. Verbeek:
Mining and Analysing Spatio-Temporal Patterns of Gene Expression in an Integrative Database Framework. - Mahsa Behzadi, Aicha Demidem, Daniel Morvan, Laurent Schwartz, Georges Stepien, Jean-Marc Steyaert:
A Model of Phospholipid Biosynthesis in Tumor in Response to an Anticancer Agent in Vivo. - Hang-mao Lee, Karl J. Dietz, Ralf Hofestädt:
Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues. - Eugene V. Korotkov, Maria A. Korotkova:
Study of the triplet periodicity phase shifts in genes. - Bruno B. Schwenk, Joachim Selbig, Yehuda Ben-Zion, Matthias Holschneider:
ExPlanes: Exploring Planes in Triplet Data. - Syed Murtuza Baker, Kai Schallau, Björn H. Junker:
Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models. - Wim De Mulder, Martin Kuiper
Clustering of gene expression profiles: creating initialization-independent clusterings by eliminating unstable genes. - Vesna Memisevic, Tijana Milenkovic, Natasa Przulj
Complementarity of network and sequence information in homologous proteins. - Amy W. Butler, Sarah Cohen-Woods, Anne Farmer, Peter McGuffin, Cathryn M. Lewis
Integrating Phenotypic Data For Depression. - Joanna Rowsell
Uncovering the Expression Patterns of Chimeric Transcripts Using Surveys of Affymetrix GeneChips. - Andrea Calabria, Ettore Mosca
SNPRanker: a tool for identification and scoring of SNPs associated to target genes. - Matteo Re, Giorgio Valentini
Noise tolerance of Multiple Classifier Systems in data integration-based gene function prediction.
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