default search action
Journal of Computational Biology, Volume 31
Volume 31, Number 1, January 2024
- Acknowledgment of Reviewers 2023. 1
- Minh Hoang
, Guillaume Marçais, Carl Kingsford:
Density and Conservation Optimization of the Generalized Masked-Minimizer Sketching Scheme. 2-20 - Ivan A. Croydon-veleslavov, Michael P. H. Stumpf
Repeated Decision Stumping Distils Simple Rules from Single-Cell Data. 21-40 - Hao Jiang
Quantitative Modeling of Stemness in Single-Cell RNA Sequencing Data: A Nonlinear One-Class Support Vector Machine Method. 41-57 - Yuanyuan Qi
Consensus Tree Under the Ancestor-Descendant Distance is NP-Hard. 58-70 - Hajoung Lee, Jaejik Kim
A Gene Selection Method Considering Measurement Errors. 71-82
Volume 31, Number 2, February 2024
- Junrong Song
Privacy-Preserving Identification of Cancer Subtype-Specific Driver Genes Based on Multigenomics Data with Privatedriver. 99-116 - Guy Karlebach
Computing Minimal Boolean Models of Gene Regulatory Networks. 117-127 - Zihan Wang, Mengxia Xu, Zonglin Yang, Yu Jin, Yong Zhang
Comparing the Performance of Three Computational Methods for Estimating the Effective Reproduction Number. 128-146 - Xiaoyang Xiang, Jiaxuan Gao, Yanrui Ding
DeepPPThermo: A Deep Learning Framework for Predicting Protein Thermostability Combining Protein-Level and Amino Acid-Level Features. 147-160 - Jianhua Jia, Genqiang Wu
iGly-IDN: Identifying Lysine Glycation Sites in Proteins Based on Improved DenseNet. 161-174 - Aleksey Y. Ogurtsov
MiCId GUI: The Graphical User Interface for MiCId, a Fast Microorganism Classification and Identification Workflow with Accurate Statistics and High Recall. 175-178
Volume 31, Number 3, 2024
- Xinyu Gu, Yuanyuan Qi
DERNA Enables Pareto Optimal RNA Design. 179-196 - Magsarjav Bataa, Siwoo Song, Kunsoo Park
Finding Highly Similar Regions of Genomic Sequences Through Homomorphic Encryption. 197-212 - Hehuan Ma
Toward Robust Self-Training Paradigm for Molecular Prediction Tasks. 213-228 - Tarrion Baird
GS-TCGA: Gene Set-Based Analysis of The Cancer Genome Atlas. 229-240 - Hai-bin Yao
Prediction of MicroRNA-Disease Potential Association Based on Sparse Learning and Multilayer Random Walks. 241-256 - Heewon Park
Unveiling Gene Regulatory Networks That Characterize Difference of Molecular Interplays Between Gastric Cancer Drug Sensitive and Resistance Cell Lines. 257-274
Volume 31, Number 4, 2024
- Tomás Vinar:
RECOMB Satellite Conference on Comparative Genomics(RECOMB-CG 2023). 275-276 - Wend Yam Donald Davy Ouedraogo
Orthology and Paralogy Relationships at Transcript Level. 277-293 - Leonard Bohnenkämper
The Floor Is Lava: Halving Natural Genomes with Viaducts, Piers, and Pontoons. 294-311 - Sanket Wagle
Asymmetric Cluster-Based Measures for Comparative Phylogenetics. 312-327 - Elahe Khayatian
The k-Robinson-Foulds Dissimilarity Measures for Comparison of Labeled Trees. 328-344 - Yufeng Wu
Computing the Bounds of the Number of Reticulations in a Tree-Child Network That Displays a Set of Trees. 345-359 - Kaari Landry
A Fixed-Parameter Tractable Algorithm for Finding Agreement Cherry-Reduced Subnetworks in Level-1 Orchard Networks. 360-379
Volume 31, Number 5, 2024
- Yun William Yu
On Minimizers and Convolutional Filters: Theoretical Connections and Applications to Genome Analysis. 381-395 - Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir
Enforcing Temporal Consistency in Migration History Inference. 396-415 - Claudio Arbib, Andrea D'Ascenzo
An Integer Linear Programming Model to Optimize Coding DNA Sequences By Joint Control of Transcript Indicators. 416-428 - Jannatul Ferdous
More Is Faster: Why Population Size Matters in Biological Search. 429-444 - Juan Xia, Yuxia Li, Haotian Zhu, Feiyang Xue, Feng Shi, Nana Li
A Bayesian Change Point Model for Dynamic Alternative Transcription Start Site Usage During Cellular Differentiation. 445-457 - Isra Mohammed
Singular Value Decomposition-Based Penalized Multinomial Regression for Classifying Imbalanced Medulloblastoma Subgroups Using Methylation Data. 458-471
Volume 31, Number 6, 2024
- Murray Patterson
Special Issue, Part I 19th International Symposium on Bioinformatics Research and Applications (ISBRA 2023). 473-474 - Michael Souza, Nilton Maia, Rômulo S. Marques, Carlile Lavor
A Branch-and-Bound Algorithm for the Molecular Ordered Covering Problem. 475-485 - Xiaodi Hou, Guoming Sang, Zhi Liu, Xiaobo Li, Yi-Jia Zhang
Visual Recalibration and Gating Enhancement Network for Radiology Report Generation. 486-497 - Casper Asbjørn Eriksen
Toward the Reconciliation of Inconsistent Molecular Structures from Biochemical Databases. 498-512 - Mathieu Bolteau
Boolean Network Models of Human Preimplantation Development. 513-523 - Enrico Rossignolo
Enhanced Compression of k-Mer Sets with Counters via de Bruijn Graphs. 524-538 - Carissa Bleker, Stephen K. Grady
A Comparative Study of Gene Co-Expression Thresholding Algorithms. 539-548 - Sarah von Löhneysen
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction. 549-563 - Zhidong Yang
Improved Denoising of Cryo-Electron Microscopy Micrographs with Simulation-Aware Pretraining. 564-575 - Tian-Jing Qiao
A Fusion Learning Model Based on Deep Learning for Single-Cell RNA Sequencing Data Clustering. 576-588 - Gatis Melkus
Transcriptional Hubs Within Cliques in Ensemble Hi-C Chromatin Interaction Networks. 589-596
Volume 31, Number 7, 2024
- Guillaume Marçais
Sketching Methods with Small Window Guarantee Using Minimum Decycling Sets. 597-615 - Neda Tavakoli
GraphSlimmer: Preserving Read Mappability with the Minimum Number of Variants. 616-637 - Ran Libeskind-Hadas:
Pairwise Distances and the Problem of Multiple Optima. 638-650 - Preeti P, Azeen Riyaz, Alakto Choudhury, Priyanka Ray Choudhury
DNASCANNER v2: A Web-Based Tool to Analyze the Characteristic Properties of Nucleotide Sequences. 651-669 - Juntao Li, Shan Xiang, Xuekun Song:
Screening Nonlinear miRNA Features of Breast Cancer by Using Ensemble Regularized Polynomial Logistic Regression. 670-690 - V. A. Jisna, Ajay Abhaysing Pawar, P. B. Jayaraj:
Using Attention-UNet Models to Predict Protein Contact Maps. 691-702
Volume 31, Number 8, 2024
- Nguyen Huy Tinh, Cuong Cao Dang, Le Sy Vinh
QMix: An Efficient Program to Automatically Estimate Multi-Matrix Mixture Models for Amino Acid Substitution Process. 703-707 - Yuexuan Wang
Estimating Haplotype Structure and Frequencies: A Bayesian Approach to Unknown Design in Pooled Genomic Data. 708-726 - Jurate Saltyte Benth
Nearly Instantaneous Time-Varying Reproduction Number for Contagious Diseases - a Direct Approach Based on Nonlinear Regression. 727-741 - Xin Zhang, Liangwei Zhao, Ziyi Chai, Hao Wu, Wei Yang, Chen Li, Yu Jiang, Quanzhong Liu
NPI-DCGNN: An Accurate Tool for Identifying ncRNA-Protein Interactions Using a Dual-Channel Graph Neural Network. 742-756 - M. Tamilarasi, S. Kumarganesh
Detection and Segmentation of Glioma Tumors Utilizing a UNet Convolutional Neural Network Approach with Non-Subsampled Shearlet Transform. 757-768 - Gargi Biswas
Combining Complementarity and Binding Energetics in the Assessment of Protein Interactions: EnCPdock - A Practical Manual. 769-781
Volume 31, Number 9, 2024
- Teresa M. Przytycka:
Rosalind Franklin Society Proudly Announces the 2023 Award Recipient for Journal of Computational Biology. 783 - Zhao Ling
SuperTAD-Fast: Accelerating Topologically Associating Domains Detection Through Discretization. 784-796 - Qian Gao
Protein-Protein Interaction Prediction Model Based on ProtBert-BiGRU-Attention. 797-814 - Reza Kalhor
A Rigorous Framework to Classify the Postduplication Fate of Paralogous Genes. 815-833 - Biao Mei, Yu Jiang, Yifan Sun
Unveiling Commonalities and Differences in Genetic Regulations via Two-Way Fusion. 834-870 - Jiayuan Ding
SpatialCTD: A Large-Scale Tumor Microenvironment Spatial Transcriptomic Dataset to Evaluate Cell Type Deconvolution for Immuno-Oncology. 871-885 - Xiao-Yan Sun
HTFSMMA: Higher-Order Topological Guided Small Molecule-MicroRNA Associations Prediction. 886-906
Volume 31, Number 10, 2024
- Jian Ma, Mona Singh
RECOMB 2024 Special Issue. 907 - C. S. Elder
Approximate and Exact Optimization Algorithms for the Beltway and Turnpike Problems with Duplicated, Missing, Partially Labeled, and Uncertain Measurements. 908-926 - Rudolf Schill
Correcting for Observation Bias in Cancer Progression Modeling. 927-945 - Askar Gafurov, Tomás Vinar, Paul Medvedev, Brona Brejová
Fast Context-Aware Analysis of Genome Annotation Colocalization. 946-964 - Henry Childs
Protocol for Designing De Novo Noncanonical Peptide Binders in OSPREY. 965-974 - Luca Renders
Lossless Approximate Pattern Matching: Automated Design of Efficient Search Schemes. 975-989 - Kapil Devkota, Anselm Blumer, Xiaozhe Hu, Lenore Cowen
Approximate IsoRank for Scalable and Functionally Meaningful Cross-Species Alignments of Protein Interaction Networks. 990-1007 - Yuxuan Du
Imputing Metagenomic Hi-C Contacts Facilitates the Integrative Contig Binning Through Constrained Random Walk with Restart. 1008-1021 - Alessio Campanelli, Giulio Ermanno Pibiri
Where the Patterns Are: Repetition-Aware Compression for Colored de Bruijn Graphs*. 1022-1044 - Spencer Krieger
Robust Optimal Metabolic Factories. 1045-1086
Volume 31, Number 11, 2024
- Hao Zhu
From Noise to Knowledge: Diffusion Probabilistic Model-Based Neural Inference of Gene Regulatory Networks. 1087-1103 - Amit K. Chakraborty
From Policy to Prediction: Assessing Forecasting Accuracy in an Integrated Framework with Machine Learning and Disease Models. 1104-1117 - Maryam Jafari Khanghahi, Reza Khoshsiar Ghaziani
Bifurcations and Homoclinic Orbits of a Model Consisting of Vegetation-Prey-Predator Populations. 1118-1145 - Pedro Quesado, Luis H. M. Torres
A Hybrid GNN Approach for Improved Molecular Property Prediction. 1146-1157 - Heewon Park
Network-Constrained Eigen-Single-Cell Profile Estimation for Uncovering Crucial Immunogene Regulatory Systems in Human Bone Marrow. 1158-1178 - Wimonnat Sukpol, Teeraphan Laomettachit, Anuwat Tangthanawatsakul
A Cancer Subpopulation Competition Model Reveals Optimal Levels of Immune Response that Minimize Tumor Size. 1179-1194
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2024-12-16 22:17 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by: