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Database - The Journal of Biological Databases and Curation, Volume 2025

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Volume 2025, 2025

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  - journals/biodb/GreenROGPBS25
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Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Sam Griffiths-Jones, Anton I. Petrov, Alex Bateman, Blake A. Sweeney:
LitSumm: large language models for literature summarization of noncoding RNAs.
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  - journals/biodb/X25
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Correction to: The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study.
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  - journals/biodb/ZhangSFRZLLCSSCSCM25
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Limin Zhang, Julian R. Starr, Bruce Ford, Anton Reznicek, Yuxuan Zhou, Étienne Léveillé-Bourret, Étienne Lacroix-Carignan, Jacques Cayouette, Tyler W. Smith, Donald Sutherland, Paul Catling, Jeffery M. Saarela, Hong Cui, James A. Macklin:
Helping authors produce FAIR taxonomic data: evaluation of an author-driven phenotype data production prototype.
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  - journals/biodb/HuGYLHJ25
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Yaxuan Hu, Xingli Guo, Yao Yun, Liang Lu, Xiaotai Huang, Songwei Jia:
DisGeNet: a disease-centric interaction database among diseases and various associated genes.
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  - journals/biodb/HegdeVGCGHKKMOMM25
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Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat, J. Harry Caufield, John B. Graybeal, Nomi L. Harris, Naouel Karam, Christian Kindermann, Nicolas Matentzoglu, James A. Overton, Mark A. Musen, Christopher J. Mungall:
A change language for ontologies and knowledge graphs.
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  - journals/biodb/KumariKRSJIAK25
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Naina Kumari, Samir Kumar, Anupama Roy, Princy Saini, Sarika Jaiswal, Mir Asif Iquebal, Ulavappa B. Angadi, Dinesh Kumar:
BuffExDb: web-based tissue-specific gene expression resource for breeding and conservation programmes in Bubalus bubalis.
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Chunjuan He, Lichang Chen, Juntao Cao, Yuqing Zhong, Zhendong Gao, Weidong Deng, Jiajin Zhang:
BbGSD: Black-boned Sheep Genome SNP Database.
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  - journals/biodb/RogersKBAGGLLPPRRF25
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Alexander B. Rogers, Varsha Kale, Germana Baldi, Antton Alberdi, M. Thomas P. Gilbert, Dipayan Gupta, Morten Tønsberg Limborg, Sen Li, Thomas Payne, Bent Petersen, Jacob A. Rasmussen, Lorna J. Richardson, Robert D. Finn:
HoloFood Data Portal: holo-omic datasets for analysing host-microbiota interactions in animal production.
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  - journals/biodb/X25a
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Expression of Concern: DisGeNet: a disease-centric interaction database among diseases and various associated genes.
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  - journals/biodb/SmithTTLGKGBZLHWTKVDPDK25
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Jennifer R. Smith, Marek A. Tutaj, Jyothi Thota, Logan Lamers, Adam C. Gibson, Akhilanand Kundurthi, Varun Reddy Gollapally, Kent C. Brodie, Stacy Zacher, Stanley J. F. Laulederkind, G. Thomas Hayman, Shur-Jen Wang, Monika Tutaj, Mary L. Kaldunski, Mahima Vedi, Wendy M. Demos, Jeffrey L. De Pons, Melinda R. Dwinell, Anne E. Kwitek:
Standardized pipelines support and facilitate integration of diverse datasets at the Rat Genome Database.
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  - journals/biodb/NouraniMMPBNJ25
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Esmaeil Nourani, Evangelia-Mantelena Makri, Xiqing Mao, Sampo Pyysalo, Søren Brunak, Katerina C. Nastou, Lars Juhl Jensen:
LSD600: the first corpus of biomedical abstracts annotated with lifestyle-disease relations.
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  - journals/biodb/SepehriHWMSDRKRTV25
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Sara Sepehri, Anja Heymans, Dinja De Win, Jan Maushagen, Audrey Sanctorum, Christophe Debruyne, Robim M. Rodrigues, Joery De Kock, Vera Rogiers, Olga De Troyer, Tamara Vanhaecke:
The TOXIN knowledge graph: supporting animal-free risk assessment of cosmetics.

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