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12. CMSB 2014: Manchester, UK
- Pedro Mendes
, Joseph O. Dada
Computational Methods in Systems Biology - 12th International Conference, CMSB 2014, Manchester, UK, November 17-19, 2014, Proceedings. Lecture Notes in Computer Science 8859, Springer 2014, ISBN 978-3-319-12981-5
Formalisms for Modelling Biological Processes
- François Lemaire
On Defining and Computing "Good" Conservation Laws. 1-19 - Sabine Pérès
SAT-Based Metabolics Pathways Analysis without Compilation. 20-31 - Kirsten Thobe, Adam Streck, Hannes Klarner, Heike Siebert:
Model Integration and Crosstalk Analysis of Logical Regulatory Networks. 32-44
Model Inference from Experimental Data
- Attila Gábor, Julio R. Banga
Improved Parameter Estimation in Kinetic Models: Selection and Tuning of Regularization Methods. 45-60 - Fabian Fröhlich
Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More. 61-72 - Fabian Fröhlich
Radial Basis Function Approximations of Bayesian Parameter Posterior Densities for Uncertainty Analysis. 73-85
Frameworks for Model Verification, Validation, and Analysis of Biological Systems
- Milan Ceska, Frits Dannenberg, Marta Z. Kwiatkowska, Nicola Paoletti
Precise Parameter Synthesis for Stochastic Biochemical Systems. 86-98 - Bing Liu
Parameter Synthesis for Cardiac Cell Hybrid Models Using δ-Decisions. 99-113 - Pauline Traynard, François Fages, Sylvain Soliman:
Trace Simplifications Preserving Temporal Logic Formulae with Case Study in a Coupled Model of the Cell Cycle and the Circadian Clock. 114-128 - Thomas Chatain, Stefan Haar, Loïg Jezequel
Characterization of Reachable Attractors Using Petri Net Unfoldings. 129-142 - Nicola Bombieri, Rosario Distefano, Giovanni Scardoni, Franco Fummi, Carlo Laudanna, Rosalba Giugno
Dynamic Modeling and Simulation of Leukocyte Integrin Activation through an Electronic Design Automation Framework. 143-154
Models and Their Biological Applications
- Lakshmeesh R. M. Maruthi, Ilya Tkachev, Alfonso Carta, Eugenio Cinquemani, Pascal Hersen
Towards Real-Time Control of Gene Expression at the Single Cell Level: A Stochastic Control Approach. 155-172 - Agnes Köhler, Jean Krivine, Jakob Vidmar:
A Rule-Based Model of Base Excision Repair. 173-195 - Rachel Lintott, Stephen McMahon, Kevin M. Prise
Using Process Algebra to Model Radiation Induced Bystander Effects. 196-210 - Rafael S. Costa, Son Nguyen, András Hartmann
Exploring the Cellular Objective in Flux Balance Constraint-Based Models. 211-224
Computational Approaches for Synthetic Biology
- Irene Otero-Muras, Julio R. Banga
Optimization Based Design of Synthetic Oscillators from Standard Biological Parts. 225-238
Flash Posters
- Abhishekh Gupta, Jason Lloyd-Price, Andre S. Ribeiro
Modelling Polar Retention of Complexes in Escherichia coli. 239-243 - Argyris Zardilis
Extensible and Executable Stochastic Models of Fatty Acid and Lipid Metabolism. 244-247 - Donal Stewart, Stephen Gilmore, Michael A. Cousin:
FM-Sim: Protocol Definition, Simulation and Rate Inference for Neuroscience Assays. 248-251 - Arne T. Bittig
Predictive Modelling of Mitochondrial Spatial Structure and Health. 252-255 - Baudoin Delépine, Pablo Carbonell
XTMS in Action: Retrosynthetic Design in the Extended Metabolic Space of Heterologous Pathways for High-Value Compounds. 256-259 - Natasa Miskov-Zivanov, Peter Wei, Chang Sheng Clement Loh:
THiMED: Time in Hierarchical Model Extraction and Design. 260-263
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