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17th BIBE 2017: Washington, DC, USA
- 17th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2017, Washington, DC, USA, October 23-25, 2017. IEEE Computer Society 2017, ISBN 978-1-5386-1324-5
Neuro-Brain Imaging
- Spyridon Manganas, Nikolaos G. Bourbakis:
A Comparative Survey on Simultaneous EEG-fMRI Methodologies. 1-8 - Lina Chato, Shahram Latifi:
Machine Learning and Deep Learning Techniques to Predict Overall Survival of Brain Tumor Patients using MRI Images. 9-14 - Chunfei Li, Chen Fang
, Malek Adjouadi
A Neuroimaging Feature Extraction Model for Imaging Genetics with Application to Alzheimer's Disease. 15-20 - Cristina Marie Morales Mojica, Nikhil V. Navkar, Nikolaos V. Tsekos
Holographic Interface for three-dimensional Visualization of MRI on HoloLens: A Prototype Platform for MRI Guided Neurosurgeries. 21-27
Drugs and Genomics
- Rebekah K. Loving, Michael R. Peterson:
Investigating the Effects of Rare Variants in Concurrent Drug Usage: An Association Analysis Approach. 28-34 - Walter Blair, Leonardo de Melo Joao
Streamlining the Genomics Processing Pipeline via Named Pipes and Persistent Spark Satasets. 35-38 - Hima Bindu Yalamanchili, Soon Jye Kho
Latent Dirichlet Allocation for Classification using Gene Expression Data. 39-44 - Asai Asaithambi, Swapnoneel Roy, Sandhya Turlapaty:
Implementation and Performance Comparison of Some Heuristic Algorithms for Block Sorting. 45-50
Cells Detection and Processing
- Runkai Zhu, Dong Sui, Hong Qin, Aimin Hao:
An Extended Type Cell Detection and Counting Method based on FCN. 51-56 - Mohammad Daneshzand, Sabreen Ayad Ibrahim, Miad Faezipour
Desynchronization and Energy Efficiency of Gaussian Neurostimulation on Different Sites of the Basal Ganglia. 57-62 - Kamyar Esmaeili Pourfarhangi, Mohammad Sahlabadi:
The Size of Red Blood Cells Regulates the Extent of Pulmonary Capillary Diameter Effect on Pulmonary Gas Exchange Process. 63-68 - Paulo Wander Barbosa, Adriano M. de A. Cirtes, Lucia Catabriga:
Studies of a Hybrid and Multiscale Tumor Growth Model via Isogeometric Analysis using PetIGA. 69-74
Brain Networks and Interfacing
- Arash Rahnama, Abdullah Alchihabi, Vijay Gupta
Encoding Multi-Resolution Brain Networks Using Unsupervised Deep Learning. 75-80 - Pablo Arnau-González
ES1D: A Deep Network for EEG-Based Subject Identification. 81-85 - George Panagopoulos:
Multi-Task Learning for Commercial Brain Computer Interfaces. 86-93 - Kanishka De, Rehan Ahmed, Cheng Hao, Chris Hutchens:
A Low Power Digitally Assisted Analog Front End for Neural Interface with Optical Reception. 94-100
RNA_DNA
- Kristyna Kupkova
Reference-free Identification of Phage DNA Using Signal Processing on Nanopore Data. 101-105 - Jing-Doo Wang, Yi-Chun Wang, Rouh-Mei Hu, Jeffrey J. P. Tsai:
Extracting the Co-occurrences of DNA Maximal Repeats in both Human and Viruses. 106-111 - Wallison William Guimarães, Cristiano Lacerda Nunes Pinto, Cristiane Neri Nobre, Luis E. Zárate:
The Relevance of Upstream and Downstream Regions of mRNA in the Prediction of Translation Initiation Site of the Protein. 112-118 - Nauman Ahmed, Koen Bertels, Zaid Al-Ars:
Predictive Genome Analysis Using Partial DNA Sequencing Data. 119-124
Tissue, Cells and Bacteria
- Lin Li, Juan Shan:
Automated Microaneurysm Detection in Fundus Images through Region Growing. 125-130 - Y-h. Taguchi
One-class Differential Expression Analysis using Tensor Decomposition-based Unsupervised Feature Extraction Applied to Integrated Analysis of Multiple Omics Data from 26 Lung Adenocarcinoma Cell Lines. 131-138 - Yuan-Hsiang Chang, Hideo Yokota, Kuniya Abe, Chun-Chi Chen, Ming-Dar Tsai:
3D Segmentation, Visualization and Quantitative Analysis of Differentiation Activity for Mouse Embryonic Stem Cells using Time-Lapse Fluorescence Microscopy Images. 139-144 - Jongseo Lee, Yoonsu Shin, Songkuk Kim, Kyoohyoung Rho, Kyu H. Park:
SVM Classification Model of Similar Bacteria Species using Negative Marker: Based on Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry. 145-150
Cognitive Modelling
- Masaki Stanley Fujimoto, Paul M. Bodily, Cole A. Lyman
Modeling Global and local Codon Bias with Deep Language Models. 151-156 - Rogrio Gabriel, Marilda Machado Spindola, Alexandre Mesquita, Angelo Zerbetto Neto:
Identification of ADHD Cognitive Pattern Disturbances Using EEG and Wavelets Analysis. 157-162 - Akm Sabbir, Antonio Jimeno-Yepes
Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings. 163-170 - Kazuya Onishi, Hiroshi Hagiwara:
Effects of Open Versus Closed Eyes on Physiological Conditions During a Working Memory Task. 171-174
Bio-Sequences Analysis
- Eloi Araujo, Marco Aurelio Stefanes, Valter de O. Ferlete, Luiz C. S. Rozante
Multiple Sequence Alignment using Hybrid Parallel Computing. 175-180 - Thi Thanh Thuy Phan, Takenao Ohkawa, Akihiro Yamamoto:
Protein-Protein Interaction Extraction from Text by Selecting Linguistic Features. 181-187 - Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars:
Streaming Distributed DNA Sequence Alignment Using Apache Spark. 188-193 - Majdi Maabreh
Towards Centralized MS/MS Spectra Preprocessing: An Empirical Evaluation of Peptides Search Engines using Ground Truth Datasets. 194-199
Biological Networks I
- Hooman Sedghamiz, Wenxiang Chen, Mark Rice, L. Darrell Whitley, Gordon Broderick:
Selecting Optimal Models Based on Efficiency and Robustness in Multi-valued Biological Networks. 200-205 - Yoonsu Shin, Jongseo Lee, Songkuk Kim:
Validity of Biosignal Processing System based on Haar Transform in IoT Application. 206-211 - M. Stanley Fujimoto, Cole A. Lyman
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction. 212-216 - Vishwa Nellore, Chris Dwyer:
Modeling and Experimental Validation of Large Scale Fluorescence Sensor Networks. 217-222
Bio-Imaging I
- Anne-Cecile Lesage, Marc Garbey:
Augmenting a Wireless Portable Ultrasound Imaging with a real-time Hemodynamics Solver. 223-229 - Nefeli Lamprinou, Emmanouil Z. Psarakis
Pixel-ECC Based Laparoscopic Image Alignment In Presence of Large Untextured Regions. 230-235 - Nikolaos Giannakeas
Image Enhancement of Routine Biopsies: A Case for Liver Tissue Detection. 236-240 - XueYan Mei, Xiaomeng Dong, Timothy Deyer, Jingyi Zeng, Theodore B. Trafalis, Yan Fang:
Thyroid Nodule Benignty Prediction by Deep Feature Extraction. 241-245
Genomes and Bacteria
- Kamil Khanipov
Novel Computational Approach for Identification of Highly Mutated Integrated HIV Genomes. 246-248 - Levent L. Albayrak, Kamil Khanipov
Exploration of Natural Alignment Scoring Rules and Clustering Thresholds for Bacterial Core/Pan Genome Analysis. 249-254 - Tamanna Motahar, Rummana Rahman, Rafiya Hossain:
A Simulation Study on Light Scattering Effect on Water-borne Bacteriophage Virus Using Mie Analysis. 255-259 - Cole A. Lyman
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. 260-265
Disease Diagnosis
- Nauman Razzaq, Shafa-At Ali Sheikh, Tahir Zaidi, Imran Akhtar, Syed Hassaan Ahmed:
Automated Differentiation between Normal Sinus Rhythm, Atrial Tachycardia, Atrial Flutter and Atrial Fibrillation during Electrophysiology. 266-272 - Georgios I. Gogolos
An mhealth Platform to Evaluate Glycaemic Variability in Type 1 Diabetes. 273-278 - Chen Fang
A Novel Gaussian Discriminant Analysis-based Computer Aided Diagnosis System for Screening Different Stages of Alzheimer's Disease. 279-284 - Evanthia E. Tripoliti, Georgia S. Karanasiou
Predicting Heart Failure Patient Events by Exploiting Saliva and Breath Biomarkers Information. 285-290 - W. H. S. D. Gunarathne, K. D. M. Perera, K. A. D. C. P. Kahandawaarachchi
Performance Evaluation on Machine Learning Classification Techniques for Disease Classification and Forecasting through Data Analytics for Chronic Kidney Disease (CKD). 291-296
Bio-Imaging II
- Junedh M. Amrute
Automated Segmentation of Bioresorbable Vascular Scaffold Struts in Intracoronary Optical Coherence Tomography Images. 297-302 - Gregory Yauney, Keith Angelino, David Edlund, Pratik Shah:
Convolutional Neural Network for Combined Classification of Fluorescent Biomarkers and Expert Annotations using White Light Images. 303-309 - (Withdrawn) Performance Comparison of HSV and L*a*b* Spaces in Thought Form Image Analysis. 310-316
- Muhammed Sayed Hammad
The Influence of the Analysis Technique on Myocardial T2 Estimation Using Cardiac Magnetic Resonance Imaging (CMR). 317-320 - Nischal Koirala, Randolph M. Setser, Jennifer Bullen, Gordon McLennan:
Determination of Dialysis Access Patency Using 2D Angiographic Images. 321-326 - Keith Angelino, David Edlund, Gaurav Bhatia, Sharon Wu, Pratik Shah:
Near-Infrared Transillumination Guides Administration of Dental 2D Radiography and CBCT Imaging. 327-333
Protein Structures
- Anna N. Ntagiou, Markos G. Tsipouras
Protein Structure Recognition by Means of Sequential Pattern Mining. 334-339 - Majdi Maabreh
Optimizing Protein Search Engines using Particle Swarm Optimization. 340-345 - Christine Kehyayan, Gregory Butler:
SynAPhy and SynAVal: Mining a Synteny-Similarity Graph to Resolve Orthology of Proteins in Fungal Genomes. 346-351 - Susana Medina G.
CALI: A Novel Visual Model for Frequent Pattern Mining in Protein-Ligand Graphs. 352-358
Bio-Sensing: Frames and Tools I
- Guillaume Joerger, Albert Huang, Barbara Bass, Brian Dunkin, Marc Garbey:
Global Laparoscopy Positioning System with a Smart Trocar. 359-366 - Hatem Loukil, Mohamed Tmar, Mahdi Louati, Afif Masmoudi, Faïez Gargouri
Towards Probabilistic Simulation of Tandem Mass Spectrometry Fragmentation Applied for Peptide Identification. 367-372 - Mahmut Unan, Ahmet Eren Sonmez:
Simulation of Dual Modality Probe. 373-378 - Kento Fujimori, Ning Li, Yasuhiro Sugimoto:
Sensitivity Comparison Between Reflection and Transmission Coefficient by Free Space Method for Non-Invasive Glucose Monitoring Sensor. 379-382 - Ponnuraj Kirthi Priya, M. Ramasubba Reddy
Effect of Regional Cellular Uncoupling in presence of LQTS2 in a 2D Cardiac Tissue. 383-387
Bio-Frameworks
- Qingzhen Xu, Fengyun Wang, Yongyi Gong, Zhoutao Wang:
An Edge-oriented Framework for Saliency Detection. 388-393 - Jing Yang, Yongyi Gong, Hefeng Wu, Qi Li:
A Feature Preserved Mesh Subdivision Framework for Biomedical Mesh. 394-401 - Duc Duong, Dvijesh J. Shastri, Ioannis T. Pavlidis
Dynamic 3D Print of the Breathing Function. 402-408 - Li Li, Runtong Zhang, Jun Wang:
A Medical Diagnosis Method Based on Interval-valued Fuzzy Cognitive Map. 409-414 - Velibor Isailovic
Coupled Computer Modeling of Atherosclerosis Development in the Coronary Arteries. 415-418
Biological Networks II
- Jiang Xie, Jiaxin Li, Dongfang Lu, Jiao Wang, Wu Zhang:
Directed Hungary Greedy Algorithm for Biomolecular Networks Alignment. 419-424 - Hoda Rajaei, Mercedes Cabrerizo, Panuwat Janwattanapong, Alberto Pinzon-Ardila, Sergio M. Gonzalez-Arias, Armando Barreto
Connectivity Dynamics of Interictal Epileptiform Activity. 425-430 - Yu Geng, Zhongmeng Zhao, Xingjian Cui, Rong Zhang, Tian Zheng, Xuanping Zhang, Jiayin Wang:
An Efficient Algorithm for Identifying Genomic Structural Inversion with Wide-spectrum of Length. 431-436 - Jonathan Felipe Xavier, Catherine Putonti, Cristiane Neri Nobre:
Computational Tools for Analysis of Codon Usage in Viral Genomes and its Hosts. 437-443
Bio-Sensing: Frames and Tools II
- Nikhil V. Navkar, Leonardo Barbosa, Shidin Balakrishnan
Towards a Modular, Customizable Robotic System for Needle-Based Image-Guided Interventions: Preliminary Designs, Implementation, and Testing. 444-449 - Haoran Zhao, Xin Liu, Habib M. Zaid, Dipan J. Shah, Michael J. Heffernan, Aaron T. Becker
Early Studies of a Transmission Mechanism for MR-Guided Interventions. 450-456 - Vignesh Kalidas, Lakshman Tamil
Real-time QRS detector using Stationary Wavelet Transform for Automated ECG Analysis. 457-461 - Georgia S. Karanasiou
In Silico Assessment of the effects of Material on Stent Deployment. 462-467
Health Condition Analysis
- Amirabbas Rezaee, Behzad Aliahmad, Pantea Peidaee:
Analysis of Macrostructure of Sleep Apnea with Respect to age and Gender Factors on CAP Database. 468-472 - Panuwat Janwattanapong, Mercedes Cabrerizo, Chen Fang
Classification of Interictal Epileptiform Discharges using Partial Directed Coherence. 473-478 - Bipasha Kashyap
Identification of Cerebellar Dysarthria with SISO Characterisation. 479-485 - Adithi D. Chakravarthy
Towards Automated Distortion and Health Correlation for Age-Related Macular Degeneration. 486-491
Bio-Sensing: Frames and Tools III
- Ernst Houtgast, Vlad Mihai Sima, Zaid Al-Ars:
High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL. 492-496 - Shanshan Ren, Koen Bertels, Zaid Al-Ars:
GPU-Accelerated GATK HaplotypeCaller with Load-Balanced Multi-Process Optimization. 497-502 - Dung Phan, Malcolm Horne, Pubudu N. Pathirana
Parkinsonian Axial Movement Capture using Wearable Sensors during the Pull Test. 503-507 - Enkhbat Batbayar, Ju Yeon Lee, Woonchul Ham, Enkhbaatar Tumenjargal, Chulgyu Song, Seungkuk Roh:
Implementation of Medical Image Reconstruction Algorithm for Photoacoustic Imaging Using k-wave Toolkit. 508-513
Healthcare
- Setu Shah
Extracting Modifiable Risk Factors from Narrative Preventive Healthcare Guidelines for EHR Integration. 514-519 - Markos G. Tsipouras
Rule Editor for ARDEN Syntax Generation towards a more Effective Self-Management of Asthma Disease Patients. 520-524 - George Spanoudakis, Panagiotis Katrakazas
Public Health Policy for Management of Hearing Impairments Based on Big Data Analytics: EVOTION at Genesis. 525-530 - Piyush Jain, Ankur Agarwal, Ravi S. Behara:
Care Coordination: A Systematic Review and a New Perspective. 531-536
Bio-Studies and Assessment
- An Zhao, Yinbao Chong, Hangmei Zhong, Jieshi Ma, Huan Zhang, Zhaolin Luo, Gaosen Li, Xiaomin Luo:
Clinical Assessment of Brachial-Ankle Pulse Wave Velocity and Stiffness Index: Hypertriglyceridemia Effects on Arterial Stiffness. 537-541 - Leyla Aydin, Erhan Kiziltan
Is Central Origin of Muscle Fatigue Distinguished Solely in Finger Tapping Performance? 542-547 - Nizamettin Dalkilic
Noninvasive Invastigation of Excitability Parameters of the Finger Branches of Median Nerve by Threshold Tracking Method. 548-554 - Tijana Tuteric, Aleksandra Vulovic
Effect of Circulation Chamber Dimensions on Aerosol Delivery Efficiency of a Commercial Dry Powder Inhaler Aerolizer®. 555-558
Analysis of Bio-Data & Health Care
- Aleksandra Vulovic
Finite Element Analysis of Femoral Implant Under Static Load. 559-562 - Smiljana Djorovic
Comparative Finite Element Analysis of Patient-Specific Tricuspid and Bicuspid Aortic Valve. 563-567 - Anis Davoudi
Delirium Prediction using Machine Learning Models on Predictive Electronic Health Records Data. 568-573 - Ioannis Paliokas
Gamification in Social Networking: A Platform for People Living with Dementia and their Caregivers. 574-579 - Yasaman Ettefagh, Mohammad Hossein Moghaddam, Saeed Vahidian:
A novel low-complexity framework in ultra-wideband imaging for breast cancer detection. 580-584
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