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7th AlCoB 2020: Missoula, MT, USA

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Carlos Martín-Vide, Miguel A. Vega-Rodríguez, Travis J. Wheeler:
Algorithms for Computational Biology - 7th International Conference, AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings. Lecture Notes in Computer Science 12099, Springer 2020, ISBN 978-3-030-42265-3
Due to COVID-19 postponed to AlCoB 2021.

Genomics

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  - conf/alcob/AzizTM20
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Md Momin Al Aziz, Parimala Thulasiraman, Noman Mohammed:
Parallel Generalized Suffix Tree Construction for Genomic Data. 3-15
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Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. 16-28
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  - conf/alcob/SiqueiraBDD20
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Gabriel Siqueira, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
Heuristics for Reversal Distance Between Genomes with Duplicated Genes. 29-40
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Lucia Williams, Brendan Mumey:
Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics. 41-48
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Zhe Yu, Chunfang Zheng, David Sankoff:
Gaps and Runs in Syntenic Alignments. 49-60

Phylogenetics

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Hannah Brown, Lei Zuo, Dan Gusfield:
Comparing Integer Linear Programming to SAT-Solving for Hard Problems in Computational and Systems Biology. 63-76
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Remie Janssen, Mark Jones, Yukihiro Murakami:
Combining Networks Using Cherry Picking Sequences. 77-92
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Remie Janssen, Yukihiro Murakami:
Linear Time Algorithm for Tree-Child Network Containment. 93-107
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  - conf/alcob/KatebiFBMLSMNWH20
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Mohsen Katebi, Pedro Feijão, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Reza Miraskarshahi, Matthew Nguyen, Johnathan Wong, William Hsiao, Cédric Chauve, Leonid Chindelevitch:
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals. 108-124
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  - conf/alcob/KordiB20
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Misagh Kordi, Mukul S. Bansal:
TreeSolve: Rapid Error-Correction of Microbial Gene Trees. 125-139

RNA-Seq and Other Biological Processes

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Edward E. Allen, John Farrell, Alexandria F. Harkey, David J. John, Gloria K. Muday, James L. Norris, Bo Wu:
Time Series Adjustment Enhancement of Hierarchical Modeling of Arabidopsis Thaliana Gene Interactions. 143-154
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  - conf/alcob/ChenCS20
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Jiarui Chen, Hong-Hin Cheong, Shirley Weng In Siu:
BESTox: A Convolutional Neural Network Regression Model Based on Binary-Encoded SMILES for Acute Oral Toxicity Prediction of Chemical Compounds. 155-166
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  - conf/alcob/LiangLCC20
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Shaoheng Liang, Qingnan Liang, Rui Chen, Ken Chen:
Stratified Test Alleviates Batch Effects in Single-Cell Data. 167-177
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  - conf/alcob/MandalGHBP20
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Sayan Mandal, Aldo Guzmán-Sáenz, Niina Haiminen, Saugata Basu, Laxmi Parida:
A Topological Data Analysis Approach on Predicting Phenotypes from Gene Expression Data. 178-187
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Shunfu Mao, Yihan Jiang, Edwin Basil Mathew, Sreeram Kannan:
BOAssembler: A Bayesian Optimization Framework to Improve RNA-Seq Assembly Performance. 188-197

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