MLML2R: Maximum Likelihood Estimation of DNA Methylation and
Hydroxymethylation Proportions
Maximum likelihood estimates (MLE) of the proportions
of 5-mC and 5-hmC in the DNA using information from BS-conversion,
TAB-conversion, and oxBS-conversion methods. One can use information from all three methods
or any combination of two of them. Estimates are based on Binomial model by
Qu et al. (2013) <doi:10.1093/bioinformatics/btt459> and
Kiihl et al. (2019) <doi:10.1515/sagmb-2018-0031>.
| Version: |
0.3.3 |
| Suggests: |
minfi, microbenchmark, GEOquery, knitr, rmarkdown, IlluminaHumanMethylation450kmanifest |
| Published: |
2019-10-17 |
| DOI: |
10.32614/CRAN.package.MLML2R |
| Author: |
Samara Kiihl [aut, cre],
Maria Jose Martinez-Garrido [aut],
Arce Domingo-Relloso [aut],
Jose Bermudez [aut],
Maria Tellez-Plaza [aut] |
| Maintainer: |
Samara Kiihl <samara at ime.unicamp.br> |
| BugReports: |
https://github.com/samarafk/MLML2R/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/samarafk/MLML2R |
| NeedsCompilation: |
no |
| Citation: |
MLML2R citation info |
| CRAN checks: |
MLML2R results |
Documentation:
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