treestats: Phylogenetic Tree Statistics
Collection of phylogenetic tree statistics, collected throughout the literature. All functions have been written to maximize computation speed. The package includes umbrella functions to calculate all statistics, all balance associated statistics, or all branching time related statistics. Furthermore, the 'treestats' package supports summary statistic calculations on Ltables, provides speed-improved coding of branching times, Ltable conversion and includes algorithms to create intermediately balanced trees. Full description can be found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.
| Version: | 1.70.5 |
| Depends: | Rcpp |
| Imports: | ape, nloptr |
| LinkingTo: | Rcpp, nloptr |
| Suggests: | phyloTop, testthat, DDD, geiger, nLTT, castor, adephylo, ggplot2, tibble, picante, treebalance, RPANDA, lintr, rmarkdown, knitr, igraph, RSpectra, Matrix, abcrf, pheatmap |
| Published: | 2024-08-26 |
| DOI: | 10.32614/CRAN.package.treestats |
| Author: | Thijs Janzen |
| Maintainer: | Thijs Janzen <thijsjanzen at gmail.com> |
| BugReports: | https://github.com/thijsjanzen/treestats/issues |
| License: | GPL-3 |
| URL: | https://github.com/thijsjanzen/treestats, https://thijsjanzen.github.io/treestats/ |
| NeedsCompilation: | yes |
| Citation: | treestats citation info |
| Materials: | README NEWS |
| In views: | Phylogenetics |
| CRAN checks: | treestats results |
Documentation:
| Reference manual: | treestats.pdf |
| Vignettes: |
Example: abc (source, R code) Example: data (source, R code) Getting started (source, R code) Speed improvement (source, R code) |
Downloads:
| Package source: | treestats_1.70.5.tar.gz |
| Windows binaries: | r-devel: treestats_1.70.5.zip, r-release: treestats_1.70.5.zip, r-oldrel: treestats_1.70.5.zip |
| macOS binaries: | r-release (arm64): treestats_1.70.5.tgz, r-oldrel (arm64): treestats_1.70.5.tgz, r-release (x86_64): treestats_1.70.5.tgz, r-oldrel (x86_64): treestats_1.70.5.tgz |
| Old sources: | treestats archive |
Reverse dependencies:
| Reverse imports: | secsse |
Linking:
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