onemap: Construction of Genetic Maps in Experimental Crosses

Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint approaches using hidden Markov models.

Version:	3.0.0
Depends:	R (≥ 3.6.0)
Imports:	ggplot2 (≥ 2.2.1), plotly (≥ 4.7.1), reshape2 (≥ 1.4.1), Rcpp (≥ 0.10.5), graphics, methods, stats, utils, grDevices, smacof, princurve, parallel, dplyr, tidyr, htmlwidgets, ggpubr, RColorBrewer, dendextend, rebus, vcfR (≥ 1.6.0)
LinkingTo:	Rcpp (≥ 0.10.5)
Suggests:	knitr (≥ 1.10), rmarkdown, testthat, stringr
Published:	2022-11-26
DOI:	10.32614/CRAN.package.onemap
Author:	Gabriel Margarido [aut], Marcelo Mollinari [aut], Cristiane Taniguti [ctb, cre], Getulio Ferreira [ctb], Rodrigo Amadeu [ctb], Karl Broman [ctb], Katharine Preedy [ctb, cph] (MDS ordering algorithm), Bastian Schiffthaler [ctb, cph] (HMM parallelization), Augusto Garcia [aut, ctb]
Maintainer:	Cristiane Taniguti <chtaniguti at tamu.edu>
BugReports:	https://github.com/augusto-garcia/onemap/wiki
License:	GPL-3
URL:	https://github.com/augusto-garcia/onemap
NeedsCompilation:	yes
Citation:	onemap citation info
In views:	Agriculture
CRAN checks:	onemap results

Documentation:

Reference manual:	onemap.pdf
Vignettes:	Inbred Based Populations Introduction to R Outcrossing Populations Overview

Downloads:

Package source:	onemap_3.0.0.tar.gz
Windows binaries:	r-devel: onemap_3.0.0.zip, r-release: onemap_3.0.0.zip, r-oldrel: onemap_3.0.0.zip
macOS binaries:	r-release (arm64): onemap_3.0.0.tgz, r-oldrel (arm64): onemap_3.0.0.tgz, r-release (x86_64): onemap_3.0.0.tgz, r-oldrel (x86_64): onemap_3.0.0.tgz
Old sources:	onemap archive

Linking:

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