DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) <doi:10.1111/ele.12461>.

Version:	4.4.1
Depends:	R (≥ 4.2.0)
Imports:	deSolve, graphics, stats, utils, DDD (≥ 5.0), subplex, Matrix, tensor, pracma, testit, foreach, doParallel, magrittr, parallel, Rcpp (≥ 1.0.10)
LinkingTo:	Rcpp, RcppEigen, BH (≥ 1.81.0-1)
Suggests:	covr, testthat (≥ 2.1.0), knitr, rmarkdown, gridExtra, dplyr, ggplot2, ggtree (≥ 3.0.0), tidytree, tidyr, purrr, ape, phytools, tibble
Enhances:	doMC
Published:	2023-10-21
DOI:	10.32614/CRAN.package.DAISIE
Author:	Rampal S. Etienne [aut, cre], Luis Valente [aut], Albert B. Phillimore [aut], Bart Haegeman [aut], Joshua W. Lambert [aut], Pedro Santos Neves [aut], Shu Xie [aut], Richèl J.C. Bilderbeek [aut], Hanno Hildenbrandt [aut], Torsten Hauffe [ctb], Giovanni Laudanno [ctb], Nadiah Kristensen [ctb], Raphael Scherrer [ctb]
Maintainer:	Rampal S. Etienne <r.s.etienne at rug.nl>
BugReports:	https://github.com/rsetienne/DAISIE/issues
License:	GPL (≥ 3) | file LICENSE
Copyright:	See the file COPYRIGHTS for various DAISIE copyright details DAISIE copyright details
URL:	https://github.com/rsetienne/DAISIE, https://rsetienne.github.io/DAISIE/
NeedsCompilation:	yes
SystemRequirements:	C++17
Materials:	NEWS
CRAN checks:	DAISIE results

Documentation:

Reference manual:	DAISIE.pdf
Vignettes:	Demo: Fitting clade-specific and island-wide diversity-dependence models in DAISIE Demo optimizing parameters Demo simulating islands DAISIE 'stac' values

Downloads:

Package source:	DAISIE_4.4.1.tar.gz
Windows binaries:	r-devel: DAISIE_4.4.1.zip, r-release: DAISIE_4.4.1.zip, r-oldrel: DAISIE_4.4.1.zip
macOS binaries:	r-release (arm64): DAISIE_4.4.1.tgz, r-oldrel (arm64): DAISIE_4.4.1.tgz, r-release (x86_64): DAISIE_4.4.1.tgz, r-oldrel (x86_64): DAISIE_4.4.1.tgz
Old sources:	DAISIE archive

Reverse dependencies:

Reverse imports:	DAISIEprep
Reverse suggests:	nLTT

Linking:

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