Train ctc

def run(
    syms: str,
    img_dirs: List[str],
    tr_txt_table: str,
    va_txt_table: str,
    common: CommonArgs = CommonArgs(),
    train: TrainArgs = TrainArgs(),
    optimizer: OptimizerArgs = OptimizerArgs(),
    scheduler: SchedulerArgs = SchedulerArgs(),
    data: DataArgs = DataArgs(),
    trainer: TrainerArgs = TrainerArgs(),
    decode: DecodeArgs = DecodeArgs(),
):
    pl.seed_everything(common.seed)

    loader = ModelLoader(
        common.train_path, filename=common.model_filename, device="cpu"
    )

    # prepare the symbols
    syms = SymbolsTable(syms)
    for d in train.delimiters:
        assert d in syms, f'The delimiter "{d}" is not available in the symbols file'

    # maybe load a checkpoint
    if train.pretrain:
        # Move the checkpoint in a pretrained directory to avoid it being selected by find_best
        initial_ckpt = os.path.join(common.experiment_dirpath, common.checkpoint)
        target_ckpt = os.path.join(
            common.experiment_dirpath, "pretrained", common.checkpoint
        )
        loader.move_file(source=initial_ckpt, target=target_ckpt)
        checkpoint_path = loader.prepare_checkpoint(
            common.checkpoint, os.path.dirname(target_ckpt), common.monitor
        )

    elif train.resume:
        checkpoint_path = loader.prepare_checkpoint(
            common.checkpoint, common.experiment_dirpath, common.monitor
        )
    else:
        checkpoint_path = None

    # load the non-pytorch_lightning model
    model = loader.load()
    assert (
        model is not None
    ), "Could not find the model. Have you run pylaia-htr-create-model?"

    if train.resume or train.pretrain:
        if train.pretrain:
            checkpoint_path = loader.reset_parameters(
                syms=syms,
                model=model,
                model_path=os.path.join(common.train_path, common.model_filename),
                checkpoint_path=checkpoint_path,
                early_stopping_patience=train.early_stopping_patience,
            )

        trainer.max_epochs += torch.load(checkpoint_path)["epoch"]
        log.info(
            f'Using checkpoint "{checkpoint_path}" in {"pretrain" if train.pretrain else "resume"} mode'
        )
        log.info(f"Max epochs set to {trainer.max_epochs}")

    if train.freeze_layers:
        loader.freeze_layers(model, train.freeze_layers)

    # prepare the engine
    engine_module = HTREngineModule(
        model,
        [syms[d] for d in train.delimiters],
        optimizer=optimizer,
        scheduler=scheduler,
        batch_input_fn=Compose([ItemFeeder("img"), ImageFeeder()]),
        batch_target_fn=ItemFeeder("txt"),
        batch_id_fn=ItemFeeder("id"),  # Used to print image ids on exception
    )

    # prepare the data
    dataset_stats = ImageLabelsStats(
        stage="fit",
        tables=[tr_txt_table, va_txt_table],
        img_dirs=img_dirs,
    )
    data_module = DataModule(
        syms=syms,
        img_dirs=img_dirs,
        tr_txt_table=tr_txt_table,
        va_txt_table=va_txt_table,
        batch_size=data.batch_size,
        min_valid_size=model.get_min_valid_image_size(dataset_stats.max_width)
        if dataset_stats.is_fixed_height
        else None,
        color_mode=data.color_mode,
        shuffle_tr=not bool(trainer.limit_train_batches),
        augment_tr=train.augment_training,
        stage="fit",
        num_workers=data.num_workers,
        reading_order=data.reading_order,
        space_token=decode.input_space,
        space_display=decode.output_space,
    )

    # prepare the training callbacks
    # TODO: save on lowest_va_wer and every k epochs https://github.com/PyTorchLightning/pytorch-lightning/issues/2908
    checkpoint_callback = pl.callbacks.ModelCheckpoint(
        dirpath=common.experiment_dirpath,
        filename="{epoch}-lowest_" + common.monitor,
        monitor=common.monitor,
        verbose=True,
        save_top_k=train.checkpoint_k,
        mode="min",
        save_last=True,
    )
    checkpoint_callback.CHECKPOINT_NAME_LAST = "{epoch}-last"
    early_stopping_callback = pl.callbacks.EarlyStopping(
        monitor=common.monitor,
        patience=train.early_stopping_patience,
        verbose=True,
        mode="min",
        strict=False,  # training_step may return None
    )
    callbacks = [
        ProgressBar(refresh_rate=trainer.progress_bar_refresh_rate),
        checkpoint_callback,
        early_stopping_callback,
        checkpoint_callback,
    ]
    if train.gpu_stats:
        callbacks.append(ProgressBarGPUStats())
    if scheduler.active:
        callbacks.append(LearningRate(logging_interval="epoch"))

    # prepare the logger
    loggers = [EpochCSVLogger(common.experiment_dirpath)]
    if train.log_to_wandb:
        wandb_logger = pl.loggers.WandbLogger(project="PyLaia")
        wandb_logger.watch(model)
        loggers.append(wandb_logger)

    # prepare the trainer
    trainer = pl.Trainer(
        default_root_dir=common.train_path,
        resume_from_checkpoint=checkpoint_path,
        callbacks=callbacks,
        logger=loggers,
        checkpoint_callback=True,
        **vars(trainer),
    )

    # train!
    trainer.fit(engine_module, datamodule=data_module)

    # training is over
    if early_stopping_callback.stopped_epoch:
        log.info(
            "Early stopping triggered after epoch"
            f" {early_stopping_callback.stopped_epoch + 1} (waited for"
            f" {early_stopping_callback.wait_count} epochs). The best score was"
            f" {early_stopping_callback.best_score}"
        )
    log.info(
        f"Model has been trained for {trainer.current_epoch + 1} epochs"
        f" ({trainer.global_step + 1} steps)"
    )
    log.info(
        f"Best {checkpoint_callback.monitor}={checkpoint_callback.best_model_score} "
        f"obtained with model={checkpoint_callback.best_model_path}"
    )

def get_args(argv: Optional[List[str]] = None) -> Dict[str, Any]:
    parser = jsonargparse.ArgumentParser()
    parser.add_argument(
        "--config", action=jsonargparse.ActionConfigFile, help="Configuration file"
    )
    parser.add_argument(
        "syms",
        type=str,
        help=(
            "Mapping from strings to integers. "
            "The CTC symbol must be mapped to integer 0"
        ),
    )
    parser.add_argument(
        "img_dirs",
        type=List[str],
        default=[],
        help="Directories containing segmented line images",
    )
    parser.add_argument(
        "tr_txt_table",
        type=str,
        help="Character transcription of each training image",
    )
    parser.add_argument(
        "va_txt_table",
        type=str,
        help="Character transcription of each validation image",
    )
    parser.add_class_arguments(CommonArgs, "common")
    parser.add_class_arguments(DataArgs, "data")
    parser.add_class_arguments(TrainArgs, "train")
    parser.add_function_arguments(log.config, "logging")
    parser.add_class_arguments(OptimizerArgs, "optimizer")
    parser.add_class_arguments(SchedulerArgs, "scheduler")
    parser.add_class_arguments(TrainerArgs, "trainer")
    parser.add_class_arguments(DecodeArgs, "decode")

    args = parser.parse_args(argv, with_meta=False).as_dict()

    args["common"] = CommonArgs(**args["common"])
    args["train"] = TrainArgs(**args["train"])
    args["data"] = DataArgs(**args["data"])
    args["optimizer"] = OptimizerArgs(**args["optimizer"])
    args["scheduler"] = SchedulerArgs(**args["scheduler"])
    args["trainer"] = TrainerArgs(**args["trainer"])
    args["decode"] = DecodeArgs(**args["decode"])

    return args

def main():
    args = get_args()
    args = common_main(args)
    run(**args)