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Migrate Your Genomic Research to the Cloud

Secure, cost-effective genomic analysis at scale.

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The PRIMED Consortium: Reducing disparities in polygenic risk assessmentUsing the AnVIL, the PRIMED Consortium is developing methods to improve the performance of PRSs in global populations and individuals of diverse genetic ancestry.

A complete reference genome improves analysis of human genetic variationUsing the AnVIL, researchers find the T2T-CHM13 reference genome universally improves the analysis of human genetic variation.

Paper Workspace

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)AnVIL inverts the traditional model of genomic analysis, eliminating data movement and providing scalable, shared computing resources.

AnVIL Shorts: How can AnVIL help my research?Our short video series shows how AnVIL improves collaborative science for different researcher roles.

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading eventsUsing the AnVIL, researchers investigate the effect of superspreading events in the Boston area.

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The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocolsDockstore is an open source platform for publishing, sharing, and finding bioinformatics tools and workflows.

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Orchestrating single-cell analysis with BioconductorThe AnVIL hosts a detailed book of single-cell methods and analysis techniques.

Paper Workspace

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 updateAnVIL has access to full Galaxy capabilities, a computational workbench used by thousands of scientists to analyze biomedical data.

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Analysis Portals

Terra

TerraCollaborate in Terra, AnVIL's secure, scalable, cloud compute environment.

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AnVIL Data Explorer

AnVIL Data ExplorerBuild cross study cohorts for analysis in Terra.

Datasets Learn More

Dockstore

DockstoreCreate and share Docker-based workflows.

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NCPI

NCPIInteroperate with other NIH data commons.

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Bioconductor

BioconductorAnalyze genomic data in the R statistical language.

Galaxy

GalaxyRun batch analysis workflows and interactive visualizations.

Jupyter

JupyterRun interactive analysis with python or R.

Seqr

SeqrIdentify disease-causing variants.

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Access diverse, open and controlled access, cloud-hosted datasets

500+

Cohorts

4000+

Terabytes

600k+

Participants

ALS-Compute

CARD

CCDG

Centers for Common Disease Genomics

CMG

Centers for Mendelian Genetics

CMH

Convergent Neuroscience

Convergent Neuro Consortium

CSER

Clinical Sequencing Evidence-Generating Research Consortium

eMERGE

Electronic and MEdical Records and Genomics Project

GREGoR

GTEx

The Genotype-Tissue Expression Project

HPRC

Human Pangenome Reference Consortium

PAGE

Population Architecture Using Genomics and Epidemiology

T2T

Telomere-to-Telomere

WGSPD1

1000G

The 1000 Genomes Project

Consortia Roadmap Explore Datasets Contribute Data

Create, share, and reuse reproducible analysis workspaces

Workspaces aggregate data and analysis methods. Start quickly from an existing workspace and customize it to your needs.

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GATK

GATK - Best practices for somatic CNV discoveryA somatic copy number variation workflow, representing the Variant Discovery portion of the Somatic CNV Discovery pipeline.

GATK

GATK - Best Practices for Germline SNPs & IndelsA fully reproducible example of Processing For Variant Discovery, HaplotypeCallerGVCF, and Joint Discovery workflows.

Hail GWAS

Hail GWAS PIPELINEA basic tutorial for using Hail, a python-based package for working with genomic data.

infer CNV

inferCNV Tumor Single-Cell RNA-Seq Analysis PipelineCompare RNA from tumor samples with corresponding “normal” samples to identify evidence for copy number variations in tumors.

Optimus Pipeline

Optimus PipelineThe Optimus pipeline processes 3-prime single-cell transcriptome data from the 10X Genomics v2 (and v3) assay.

Collaborate in a secure, cost-effective, scalable, cloud-based environment

Reduce compute and storage costs, reduce security and compliance overhead, scale to meet your needs.

Reduce Data Transfer Fees

Reduce Data Transfer Fees

There is no charge for data transferred from cloud storage to cloud compute within the same region.

Reduce Data Storage Costs

Reduce Data Storage Costs

AnVIL hosted datasets are stored free of charge to researchers.

Collaborate Securely

Collaborate Securely

Securely work with controlled-access data in Terra, AnVIL's FedRAMP Moderate compliant analysis platform.

Publish Reproducible Results

Publish Reproducible Results

Share analyses and workspaces to demonstrate replicable and repeatable science.

Updates, training events, and workshops

Find out about AnVIL tool and platform updates, training opportunities, and conferences.

Data Release - GREGoR Consortium

The second data release from the GREGoR Consortium (Genomics Research to Elucidate the Genetics of Rare diseases) is now available on AnVIL for controlled access by the broader scientific community.November 21, 2024

GTEx V10 Data Release on AnVIL

We are excited to announce the availability of GTEx V10 data on the AnVIL platform!November 20, 2024

Over 250 AnVIL Datasets Now Available For Request Via DUOS

The AnVIL is excited to announce the addition of 257 datasets to the AnVIL Data Library.November 15, 2024

Recent Publications

Cite AnVIL Add Publication

A Draft Human Pangenome Reference

Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, et al. (2023). Nature. https://doi.org/10.1038/s41586-023-05896-x.

Open-source Tools for Training Resources – OTTR

Candace Savonen, Carrie Wright, Ava M. Hoffman, John Muschelli, Katherine Cox, et al. (2022). Journal of Statistics and Data Science Education. https://doi.org/10.1080/26939169.2022.2118646.

National Human Genome Research Institute Genomic Data Science Analysis, Visualization, and Informatics Lab-Space: Reaching out to Clinicians

Jennifer L. Hall, Sally Honeycutt, Nicole Gonzalez, Anne O'Donnell-Luria, Cassy Overby Taylor, et al. (2023). Circulation: Genomic and Precision Medicine. https://doi.org/10.1161/CIRCGEN.122.003936.

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