rs201167086 RefSNP Report - dbSNP

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs201167086

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr9:5550700-5550711 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: delTTT / delTT / delT / dupT / dup…
delTTT / delTT / delT / dupT / dupTT / dupTTT / dup(T)₆
Variation Type: Indel Insertion and Deletion
Frequency: dupT=0.03400 (381/11206, ALFA)
delT=0.2225 (1006/4522, 1000G)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PDCD1LG2 : Intron Variant
LOC124902114 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele	Ref HMOZ	Alt HMOZ	HTRZ	HWEP
Total	Global	11206	TTTTTTTTTTTT=0.93405	TTTTTTTTTT=0.00000, TTTTTTTTTTT=0.03177, TTTTTTTTTTTTT=0.03400, TTTTTTTTTTTTTT=0.00018, TTTTTTTTTTTTTTT=0.00000	0.939791	0.006458	0.053751	32
European	Sub	9120	TTTTTTTTTTTT=0.9193	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0389, TTTTTTTTTTTTT=0.0416, TTTTTTTTTTTTTT=0.0002, TTTTTTTTTTTTTTT=0.0000	0.925408	0.008051	0.06654	32
African	Sub	1366	TTTTTTTTTTTT=1.0000	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
African Others	Sub	66	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
African American	Sub	1300	TTTTTTTTTTTT=1.0000	TTTTTTTTTT=0.0000, TTTTTTTTTTT=0.0000, TTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTT=0.0000, TTTTTTTTTTTTTTT=0.0000	1.0	0.0	0.0	N/A
Asian	Sub	42	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
East Asian	Sub	32	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other Asian	Sub	10	TTTTTTTTTTTT=1.0	TTTTTTTTTT=0.0, TTTTTTTTTTT=0.0, TTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTT=0.0, TTTTTTTTTTTTTTT=0.0	1.0	0.0	0.0	N/A
Latin American 1	Sub	72	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Latin American 2	Sub	274	TTTTTTTTTTTT=1.000	TTTTTTTTTT=0.000, TTTTTTTTTTT=0.000, TTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	1.0	0.0	0.0	N/A
South Asian	Sub	66	TTTTTTTTTTTT=1.00	TTTTTTTTTT=0.00, TTTTTTTTTTT=0.00, TTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTT=0.00, TTTTTTTTTTTTTTT=0.00	1.0	0.0	0.0	N/A
Other	Sub	266	TTTTTTTTTTTT=0.989	TTTTTTTTTT=0.000, TTTTTTTTTTT=0.004, TTTTTTTTTTTTT=0.008, TTTTTTTTTTTTTT=0.000, TTTTTTTTTTTTTTT=0.000	0.984848	0.0	0.015152	0

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	11206	(T)₁₂=0.93405	delTT=0.00000, delT=0.03177, dupT=0.03400, dupTT=0.00018, dupTTT=0.00000
Allele Frequency Aggregator	European	Sub	9120	(T)₁₂=0.9193	delTT=0.0000, delT=0.0389, dupT=0.0416, dupTT=0.0002, dupTTT=0.0000
Allele Frequency Aggregator	African	Sub	1366	(T)₁₂=1.0000	delTT=0.0000, delT=0.0000, dupT=0.0000, dupTT=0.0000, dupTTT=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	274	(T)₁₂=1.000	delTT=0.000, delT=0.000, dupT=0.000, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Other	Sub	266	(T)₁₂=0.989	delTT=0.000, delT=0.004, dupT=0.008, dupTT=0.000, dupTTT=0.000
Allele Frequency Aggregator	Latin American 1	Sub	72	(T)₁₂=1.00	delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	South Asian	Sub	66	(T)₁₂=1.00	delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
Allele Frequency Aggregator	Asian	Sub	42	(T)₁₂=1.00	delTT=0.00, delT=0.00, dupT=0.00, dupTT=0.00, dupTTT=0.00
1000Genomes	Global	Study-wide	4522	(T)₁₂=0.7775	delT=0.2225
1000Genomes	African	Sub	1300	(T)₁₂=0.7069	delT=0.2931
1000Genomes	East Asian	Sub	898	(T)₁₂=0.673	delT=0.327
1000Genomes	Europe	Sub	886	(T)₁₂=0.876	delT=0.124
1000Genomes	South Asian	Sub	848	(T)₁₂=0.893	delT=0.107
1000Genomes	American	Sub	590	(T)₁₂=0.780	delT=0.220

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 9	NC_000009.12:g.5550709_5550711del
GRCh38.p14 chr 9	NC_000009.12:g.5550710_5550711del
GRCh38.p14 chr 9	NC_000009.12:g.5550711del
GRCh38.p14 chr 9	NC_000009.12:g.5550711dup
GRCh38.p14 chr 9	NC_000009.12:g.5550710_5550711dup
GRCh38.p14 chr 9	NC_000009.12:g.5550709_5550711dup
GRCh38.p14 chr 9	NC_000009.12:g.5550706_5550711dup
GRCh37.p13 chr 9	NC_000009.11:g.5550709_5550711del
GRCh37.p13 chr 9	NC_000009.11:g.5550710_5550711del
GRCh37.p13 chr 9	NC_000009.11:g.5550711del
GRCh37.p13 chr 9	NC_000009.11:g.5550711dup
GRCh37.p13 chr 9	NC_000009.11:g.5550710_5550711dup
GRCh37.p13 chr 9	NC_000009.11:g.5550709_5550711dup
GRCh37.p13 chr 9	NC_000009.11:g.5550706_5550711dup

Gene: PDCD1LG2, programmed cell death 1 ligand 2 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PDCD1LG2 transcript	NM_025239.4:c.631+1105_63… NM_025239.4:c.631+1105_631+1107del	N/A	Intron Variant
PDCD1LG2 transcript variant X1	XM_005251600.4:c.631+1105… XM_005251600.4:c.631+1105_631+1107del	N/A	Intron Variant

Gene: LOC124902114, uncharacterized LOC124902114 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LOC124902114 transcript variant X4	XR_007061406.1:n.	N/A	Intron Variant
LOC124902114 transcript variant X1	XR_007061403.1:n.	N/A	Genic Downstream Transcript Variant
LOC124902114 transcript variant X2	XR_007061404.1:n.	N/A	Genic Downstream Transcript Variant
LOC124902114 transcript variant X3	XR_007061405.1:n.	N/A	Genic Downstream Transcript Variant
LOC124902114 transcript variant X5	XR_007061407.1:n.	N/A	Genic Downstream Transcript Variant
LOC124902114 transcript variant X6	XR_007061408.1:n.	N/A	Genic Downstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	(T)₁₂=	delTTT	delTT	delT	dupT	dupTT	dupTTT	dup(T)₆
GRCh38.p14 chr 9	NC_000009.12:g.5550700_5550711=	NC_000009.12:g.5550709_5550711del	NC_000009.12:g.5550710_5550711del	NC_000009.12:g.5550711del	NC_000009.12:g.5550711dup	NC_000009.12:g.5550710_5550711dup	NC_000009.12:g.5550709_5550711dup	NC_000009.12:g.5550706_5550711dup
GRCh37.p13 chr 9	NC_000009.11:g.5550700_5550711=	NC_000009.11:g.5550709_5550711del	NC_000009.11:g.5550710_5550711del	NC_000009.11:g.5550711del	NC_000009.11:g.5550711dup	NC_000009.11:g.5550710_5550711dup	NC_000009.11:g.5550709_5550711dup	NC_000009.11:g.5550706_5550711dup
PDCD1LG2 transcript	NM_025239.3:c.631+1096=	NM_025239.3:c.631+1105_631+1107del	NM_025239.3:c.631+1106_631+1107del	NM_025239.3:c.631+1107del	NM_025239.3:c.631+1107dup	NM_025239.3:c.631+1106_631+1107dup	NM_025239.3:c.631+1105_631+1107dup	NM_025239.3:c.631+1102_631+1107dup
PDCD1LG2 transcript	NM_025239.4:c.631+1096=	NM_025239.4:c.631+1105_631+1107del	NM_025239.4:c.631+1106_631+1107del	NM_025239.4:c.631+1107del	NM_025239.4:c.631+1107dup	NM_025239.4:c.631+1106_631+1107dup	NM_025239.4:c.631+1105_631+1107dup	NM_025239.4:c.631+1102_631+1107dup
PDCD1LG2 transcript variant X1	XM_005251600.1:c.631+1096=	XM_005251600.1:c.631+1105_631+1107del	XM_005251600.1:c.631+1106_631+1107del	XM_005251600.1:c.631+1107del	XM_005251600.1:c.631+1107dup	XM_005251600.1:c.631+1106_631+1107dup	XM_005251600.1:c.631+1105_631+1107dup	XM_005251600.1:c.631+1102_631+1107dup
PDCD1LG2 transcript variant X1	XM_005251600.4:c.631+1096=	XM_005251600.4:c.631+1105_631+1107del	XM_005251600.4:c.631+1106_631+1107del	XM_005251600.4:c.631+1107del	XM_005251600.4:c.631+1107dup	XM_005251600.4:c.631+1106_631+1107dup	XM_005251600.4:c.631+1105_631+1107dup	XM_005251600.4:c.631+1102_631+1107dup
PDCD1LG2 transcript variant X2	XM_005251601.1:c.631+1096=	XM_005251601.1:c.631+1105_631+1107del	XM_005251601.1:c.631+1106_631+1107del	XM_005251601.1:c.631+1107del	XM_005251601.1:c.631+1107dup	XM_005251601.1:c.631+1106_631+1107dup	XM_005251601.1:c.631+1105_631+1107dup	XM_005251601.1:c.631+1102_631+1107dup
PDCD1LG2 transcript variant X3	XM_005251602.1:c.631+1096=	XM_005251602.1:c.631+1105_631+1107del	XM_005251602.1:c.631+1106_631+1107del	XM_005251602.1:c.631+1107del	XM_005251602.1:c.631+1107dup	XM_005251602.1:c.631+1106_631+1107dup	XM_005251602.1:c.631+1105_631+1107dup	XM_005251602.1:c.631+1102_631+1107dup
PDCD1LG2 transcript variant X4	XM_005251603.1:c.362-6918=	XM_005251603.1:c.362-6909_362-6907del	XM_005251603.1:c.362-6908_362-6907del	XM_005251603.1:c.362-6907del	XM_005251603.1:c.362-6907dup	XM_005251603.1:c.362-6908_362-6907dup	XM_005251603.1:c.362-6909_362-6907dup	XM_005251603.1:c.362-6912_362-6907dup
PDCD1LG2 transcript variant X5	XM_005251604.1:c.362-6923=	XM_005251604.1:c.362-6914_362-6912del	XM_005251604.1:c.362-6913_362-6912del	XM_005251604.1:c.362-6912del	XM_005251604.1:c.362-6912dup	XM_005251604.1:c.362-6913_362-6912dup	XM_005251604.1:c.362-6914_362-6912dup	XM_005251604.1:c.362-6917_362-6912dup

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

44 SubSNP, 18 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	GMI	ss288944977	May 04, 2012 (137)
2	SSMP	ss663925257	Apr 01, 2015 (144)
3	1000GENOMES	ss1368152866	Aug 21, 2014 (142)
4	1000GENOMES	ss1368152867	Oct 12, 2018 (152)
5	DDI	ss1536609427	Apr 01, 2015 (144)
6	HAMMER_LAB	ss1805855800	Sep 08, 2015 (146)
7	SWEGEN	ss3004304352	Nov 08, 2017 (151)
8	MCHAISSO	ss3066235626	Nov 08, 2017 (151)
9	BIOINF_KMB_FNS_UNIBA	ss3646132917	Oct 12, 2018 (152)
10	EVA_DECODE	ss3723378080	Jul 13, 2019 (153)
11	EVA_DECODE	ss3723378081	Jul 13, 2019 (153)
12	EVA_DECODE	ss3723378082	Jul 13, 2019 (153)
13	EVA_DECODE	ss3723378083	Jul 13, 2019 (153)
14	EVA_DECODE	ss3723378084	Jul 13, 2019 (153)
15	ACPOP	ss3736264992	Jul 13, 2019 (153)
16	ACPOP	ss3736264993	Jul 13, 2019 (153)
17	INMEGENXS	ss3745706993	Jul 13, 2019 (153)
18	PACBIO	ss3786333175	Jul 13, 2019 (153)
19	KHV_HUMAN_GENOMES	ss3812010941	Jul 13, 2019 (153)
20	KHV_HUMAN_GENOMES	ss3812010942	Jul 13, 2019 (153)
21	EVA	ss3831510783	Apr 26, 2020 (154)
22	EVA	ss3839268183	Apr 26, 2020 (154)
23	EVA	ss3844730007	Apr 26, 2020 (154)
24	KOGIC	ss3965209398	Apr 26, 2020 (154)
25	KOGIC	ss3965209399	Apr 26, 2020 (154)
26	GNOMAD	ss4196689306	Apr 26, 2021 (155)
27	GNOMAD	ss4196689307	Apr 26, 2021 (155)
28	GNOMAD	ss4196689308	Apr 26, 2021 (155)
29	GNOMAD	ss4196689309	Apr 26, 2021 (155)
30	GNOMAD	ss4196689310	Apr 26, 2021 (155)
31	GNOMAD	ss4196689311	Apr 26, 2021 (155)
32	TOPMED	ss4810708735	Apr 26, 2021 (155)
33	TOPMED	ss4810708736	Apr 26, 2021 (155)
34	TOMMO_GENOMICS	ss5191853511	Apr 26, 2021 (155)
35	TOMMO_GENOMICS	ss5191853512	Apr 26, 2021 (155)
36	1000G_HIGH_COVERAGE	ss5279617401	Oct 16, 2022 (156)
37	HUGCELL_USP	ss5475919455	Oct 16, 2022 (156)
38	HUGCELL_USP	ss5475919456	Oct 16, 2022 (156)
39	HUGCELL_USP	ss5475919457	Oct 16, 2022 (156)
40	TOMMO_GENOMICS	ss5734838891	Oct 16, 2022 (156)
41	TOMMO_GENOMICS	ss5734838892	Oct 16, 2022 (156)
42	EVA	ss5828780859	Oct 16, 2022 (156)
43	EVA	ss5828780860	Oct 16, 2022 (156)
44	EVA	ss5915318625	Oct 16, 2022 (156)
45	1000Genomes	NC_000009.11 - 5550700	Oct 12, 2018 (152)
46	gnomAD - Genomes Submission ignored due to conflicting rows: Row 316595207 (NC_000009.12:5550699::T 13113/129156) Row 316595208 (NC_000009.12:5550699::TT 288/129248) Row 316595209 (NC_000009.12:5550699::TTT 4/129254)...	-	Apr 26, 2021 (155)
47	gnomAD - Genomes Submission ignored due to conflicting rows: Row 316595207 (NC_000009.12:5550699::T 13113/129156) Row 316595208 (NC_000009.12:5550699::TT 288/129248) Row 316595209 (NC_000009.12:5550699::TTT 4/129254)...	-	Apr 26, 2021 (155)
48	gnomAD - Genomes Submission ignored due to conflicting rows: Row 316595207 (NC_000009.12:5550699::T 13113/129156) Row 316595208 (NC_000009.12:5550699::TT 288/129248) Row 316595209 (NC_000009.12:5550699::TTT 4/129254)...	-	Apr 26, 2021 (155)
49	gnomAD - Genomes Submission ignored due to conflicting rows: Row 316595207 (NC_000009.12:5550699::T 13113/129156) Row 316595208 (NC_000009.12:5550699::TT 288/129248) Row 316595209 (NC_000009.12:5550699::TTT 4/129254)...	-	Apr 26, 2021 (155)
50	gnomAD - Genomes Submission ignored due to conflicting rows: Row 316595207 (NC_000009.12:5550699::T 13113/129156) Row 316595208 (NC_000009.12:5550699::TT 288/129248) Row 316595209 (NC_000009.12:5550699::TTT 4/129254)...	-	Apr 26, 2021 (155)
51	gnomAD - Genomes Submission ignored due to conflicting rows: Row 316595207 (NC_000009.12:5550699::T 13113/129156) Row 316595208 (NC_000009.12:5550699::TT 288/129248) Row 316595209 (NC_000009.12:5550699::TTT 4/129254)...	-	Apr 26, 2021 (155)
52	Korean Genome Project Submission ignored due to conflicting rows: Row 21587399 (NC_000009.12:5550699:T: 517/1832) Row 21587400 (NC_000009.12:5550700::T 151/1832)	-	Apr 26, 2020 (154)
53	Korean Genome Project Submission ignored due to conflicting rows: Row 21587399 (NC_000009.12:5550699:T: 517/1832) Row 21587400 (NC_000009.12:5550700::T 151/1832)	-	Apr 26, 2020 (154)
54	Northern Sweden Submission ignored due to conflicting rows: Row 9549857 (NC_000009.11:5550699::T 50/596) Row 9549858 (NC_000009.11:5550699:T: 67/596)	-	Jul 13, 2019 (153)
55	Northern Sweden Submission ignored due to conflicting rows: Row 9549857 (NC_000009.11:5550699::T 50/596) Row 9549858 (NC_000009.11:5550699:T: 67/596)	-	Jul 13, 2019 (153)
56	8.3KJPN Submission ignored due to conflicting rows: Row 49822818 (NC_000009.11:5550699:T: 3936/16760) Row 49822819 (NC_000009.11:5550699::T 1529/16760)	-	Apr 26, 2021 (155)
57	8.3KJPN Submission ignored due to conflicting rows: Row 49822818 (NC_000009.11:5550699:T: 3936/16760) Row 49822819 (NC_000009.11:5550699::T 1529/16760)	-	Apr 26, 2021 (155)
58	14KJPN Submission ignored due to conflicting rows: Row 68675995 (NC_000009.12:5550699::T 2614/28258) Row 68675996 (NC_000009.12:5550699:T: 6604/28258)	-	Oct 16, 2022 (156)
59	14KJPN Submission ignored due to conflicting rows: Row 68675995 (NC_000009.12:5550699::T 2614/28258) Row 68675996 (NC_000009.12:5550699:T: 6604/28258)	-	Oct 16, 2022 (156)
60	TopMed Submission ignored due to conflicting rows: Row 648086296 (NC_000009.12:5550699::T 25613/264690) Row 648086297 (NC_000009.12:5550699:T: 43981/264690)	-	Apr 26, 2021 (155)
61	TopMed Submission ignored due to conflicting rows: Row 648086296 (NC_000009.12:5550699::T 25613/264690) Row 648086297 (NC_000009.12:5550699:T: 43981/264690)	-	Apr 26, 2021 (155)
62	ALFA	NC_000009.12 - 5550700	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss4196689311	NC_000009.12:5550699:TTT:	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTT	(self)
ss3723378080, ss4196689310	NC_000009.12:5550699:TT:	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTT	(self)
468634287	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTT	(self)
ss288944977	NC_000009.10:5540699:T:	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
44912865, ss663925257, ss1368152866, ss1536609427, ss1805855800, ss3004304352, ss3736264993, ss3786333175, ss3831510783, ss3839268183, ss5191853511, ss5828780860	NC_000009.11:5550699:T:	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3066235626, ss3646132917, ss3812010942, ss3844730007, ss3965209398, ss4196689309, ss4810708736, ss5279617401, ss5475919456, ss5734838892, ss5915318625	NC_000009.12:5550699:T:	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
468634287	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3723378081	NC_000009.12:5550700:T:	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTT	(self)
ss3736264992, ss5191853512, ss5828780859	NC_000009.11:5550699::T	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss1368152867, ss3745706993	NC_000009.11:5550700::T	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss4196689306, ss4810708735, ss5475919455, ss5734838891	NC_000009.12:5550699::T	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
468634287	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3812010941, ss3965209399	NC_000009.12:5550700::T	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss3723378082	NC_000009.12:5550701::T	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTT	(self)
ss4196689307, ss5475919457	NC_000009.12:5550699::TT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
468634287	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTTT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss3723378083	NC_000009.12:5550701::TT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTTT	(self)
ss4196689308	NC_000009.12:5550699::TTT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
468634287	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTTTT	(self)
ss3723378084	NC_000009.12:5550701::TTTTTT	NC_000009.12:5550699:TTTTTTTTTTTT:… NC_000009.12:5550699:TTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs201167086

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs201167086