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Specific detection of the novel goose astrovirus using a TaqMan real-time RT-PCR technology

Microb Pathog. 2019 Dec:137:103766. doi: 10.1016/j.micpath.2019.103766. Epub 2019 Sep 30.

Abstract

Recently, a novel goose astrovirus (N-GoAstV) was discovered in China, with the transmission route of N-GoAstV unclear. In this study, we developed a TaqMan-based real-time RT-PCR (qRT-PCR) assay for the detection of N-GoAstV infection. After the optimization of the qRT-PCR assay conditions, the results demonstrated that the lower limit of detection for N-GoAstV was 33.4 copies/μL. No cross-reactivity was observed with other goose-origin viruses. Intra-assay and inter-assay variability were ≤1.36% and 2.34%, respectively. N-GoAstV was detected in both field samples, embryos and newly hatched goslings by qRT-PCR assay, provided the view that N-GoAstV may be both horizontally and vertically transmitted. The established qRT-PCR method showed high specificity, sensitivity, and reproducibility, which can be used in future investigations on the pathogenesis and epidemiology of N-GoAstV.

Keywords: Detection; Novel goose astrovirus (N-GoAstV); TaqMan; Transmission; qRT-PCR.

Publication types

  • Evaluation Study

MeSH terms

  • Animals
  • Astroviridae Infections / veterinary*
  • Astroviridae Infections / virology
  • Avastrovirus / classification
  • Avastrovirus / genetics
  • Avastrovirus / isolation & purification*
  • Bird Diseases / virology*
  • China
  • Geese / virology*
  • Real-Time Polymerase Chain Reaction / methods*
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Sensitivity and Specificity