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LOC127449374 syntaxin-16-like [ Myxocyprinus asiaticus (Chinese sucker) ]

Gene ID: 127449374, updated on 10-Apr-2024

Summary

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Gene symbol
LOC127449374
Gene description
syntaxin-16-like
See related
EnsemblRapid:ENSMTCG00000030950
Gene type
protein coding
RefSeq status
MODEL
Organism
Myxocyprinus asiaticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Catostomoidei; Catostomidae; Myxocyprinus
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Genomic context

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See LOC127449374 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current UBuf_Myxa_2 (GCF_019703515.2) 12 NC_059355.1 (44588835..44600222)

Chromosome 12 - NC_059355.1Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein-associated protein B-like Neighboring gene protein APCDD1-like Neighboring gene probable aminopeptidase NPEPL1 Neighboring gene uncharacterized si:dkey-249d8.1 Neighboring gene cathepsin Z-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059355.1 Chromosome 12 Reference UBuf_Myxa_2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-16-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019703515.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UBuf_Myxa_2 Primary Assembly

Genomic

  1. NC_059355.1 Reference UBuf_Myxa_2 Primary Assembly

    Range
    44588835..44600222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051712740.1 → XP_051568700.1  syntaxin-16-like isoform X2

    Related
    ENSMTCP00000064249.1, ENSMTCT00000067346.1

  2. XM_051712741.1 → XP_051568701.1  syntaxin-16-like isoform X3

  3. XM_051712742.1 → XP_051568702.1  syntaxin-16-like isoform X4

    Related
    ENSMTCP00000064262.1, ENSMTCT00000067359.1

  4. XM_051712739.1 → XP_051568699.1  syntaxin-16-like isoform X1

    Related
    ENSMTCP00000064247.1, ENSMTCT00000067344.1

RNA

  1. XR_007898730.1 RNA Sequence

  2. XR_007898728.1 RNA Sequence

  3. XR_007898726.1 RNA Sequence

  4. XR_007898727.1 RNA Sequence

  5. XR_007898729.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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