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LOC122019686 syntaxin-43-like [ Zingiber officinale ]

Gene ID: 122019686, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122019686
Gene description
syntaxin-43-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Zingiber officinale
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
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Genomic context

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See LOC122019686 in Genome Data Viewer
Location:
chromosome: 9A
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Zo_v1.1 (GCF_018446385.1) 9A NC_056002.1 (13337139..13342713)

Chromosome 9A - NC_056002.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase sigma factor sigA-like Neighboring gene uncharacterized LOC122021157 Neighboring gene growth-regulating factor 4-like Neighboring gene remorin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056002.1 Chromosome 9A Reference Zo_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-43-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zo_v1.1 Primary Assembly

Genomic

  1. NC_056002.1 Reference Zo_v1.1 Primary Assembly

    Range
    13337139..13342713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042577149.1 → XP_042433083.1  syntaxin-43-like

    Conserved Domains (1) summary
    COG5325
    Location:77 → 327
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Nucleotide Protein
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