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LOC119387311 polyamine deacetylase HDAC10 [ Rhipicephalus sanguineus (brown dog tick) ]

Gene ID: 119387311, updated on 27-Mar-2024

Summary

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Gene symbol
LOC119387311
Gene description
polyamine deacetylase HDAC10
See related
VectorBase:RSAN_030195; EnsemblRapid:LOC119387311
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhipicephalus sanguineus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Rhipicephalus
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Genomic context

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See LOC119387311 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
101 current BIME_Rsan_1.4 (GCF_013339695.2) 3 NC_051178.1 (141763034..141795833, complement)
100 previous assembly ASM1333969v1 (GCF_013339695.1) 3 NC_051178.1 (141763034..141795819, complement)

Chromosome 3 - NC_051178.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene histone deacetylase 6-like Neighboring gene acetyl-coenzyme A synthetase Neighboring gene elongator complex protein 1 Neighboring gene mitochondrial ribosomal protein S30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylthiotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyamine deacetylase HDAC10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhipicephalus sanguineus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIME_Rsan_1.4

Genomic

  1. NC_051178.1 Reference BIME_Rsan_1.4

    Range
    141763034..141795833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037654661.2 → XP_037510589.1  polyamine deacetylase HDAC10

    Related
    XP_037510589.1, XM_037654661.2
    Conserved Domains (2) summary
    pfam02148
    Location:402 → 459
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:9 → 356
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

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