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LOC117478439 interleukin-6-like [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117478439, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117478439
Gene description
interleukin-6-like
See related
EnsemblRapid:ENSTBNG00005023184
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
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Genomic context

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See LOC117478439 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987564.1 (6554252..6556806)

NW_022987564.1Genomic Context describing neighboring genes Neighboring gene lactose-binding lectin l-2-like Neighboring gene Rap guanine nucleotide exchange factor (GEF) 5a Neighboring gene translocase of outer mitochondrial membrane 7 homolog (yeast) Neighboring gene hyccin PI4KA lipid kinase complex subunit 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987564 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables interleukin-6 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-helper 17 cell lineage commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myeloid cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interleukin-6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987564.1 Reference fTreBer1.1

    Range
    6554252..6556806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034125494.1 → XP_033981385.1  interleukin-6-like

    Related
    ENSTBNP00005053461.1, ENSTBNT00005055314.1
    Conserved Domains (1) summary
    cl02473
    Location:97 → 204
    IL6; Interleukin-6/G-CSF/MGF family
Nucleotide Protein
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