[go: up one dir, main page]
More Web Proxy on the site http://driver.im/

Warning: The NCBI web site requires JavaScript to function. more...

U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

STX16 syntaxin 16 [ Theropithecus gelada (gelada) ]

Gene ID: 112632816, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
STX16
Gene description
syntaxin 16
See related
Ensembl:ENSTGEG00000011902
Gene type
protein coding
RefSeq status
MODEL
Organism
Theropithecus gelada
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Theropithecus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See STX16 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Tgel_1.0 (GCF_003255815.1) 10 NC_037678.1 (43934847..43962156, complement)

Chromosome 10 - NC_037678.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112633766 Neighboring gene aminopeptidase like 1 Neighboring gene uncharacterized LOC112632540 Neighboring gene APC down-regulated 1 like Neighboring gene putative 60S ribosomal protein L37a

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037678.1 Chromosome 10 Reference Tgel_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
syntaxin-16

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Theropithecus gelada Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tgel_1.0 Primary Assembly

Genomic

  1. NC_037678.1 Reference Tgel_1.0 Primary Assembly

    Range
    43934847..43962156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025398851.1 → XP_025254636.1  syntaxin-16 isoform X4

    UniProtKB/TrEMBL
    A0A8D2F2A2
    Related
    ENSTGEP00000014654.1, ENSTGET00000017565.1
    Conserved Domains (2) summary
    COG5325
    Location:52 → 280
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15845
    Location:212 → 270
    SNARE_syntaxin16; SNARE motif of syntaxin 16

  2. XM_025398850.1 → XP_025254635.1  syntaxin-16 isoform X3

    Conserved Domains (2) summary
    COG5325
    Location:56 → 284
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15845
    Location:216 → 274
    SNARE_syntaxin16; SNARE motif of syntaxin 16

  3. XM_025398849.1 → XP_025254634.1  syntaxin-16 isoform X2

    Conserved Domains (2) summary
    COG5325
    Location:69 → 297
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15845
    Location:229 → 287
    SNARE_syntaxin16; SNARE motif of syntaxin 16

  4. XM_025398848.1 → XP_025254633.1  syntaxin-16 isoform X1

    UniProtKB/TrEMBL
    A0A8D2F205
    Related
    ENSTGEP00000014655.1, ENSTGET00000017566.1
    Conserved Domains (2) summary
    COG5325
    Location:73 → 301
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15845
    Location:233 → 291
    SNARE_syntaxin16; SNARE motif of syntaxin 16

  5. XM_025398853.1 → XP_025254638.1  syntaxin-16 isoform X5

    Conserved Domains (2) summary
    COG5325
    Location:20 → 248
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15845
    Location:180 → 238
    SNARE_syntaxin16; SNARE motif of syntaxin 16
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.